Parental gene:

NECAP1, ENSDNOG00000014778

Aliases:None
Description:NECAP endocytosis associated 1 [Source:HGNC Symbol;Acc:24539]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_16118:51701..63684(+)


>ENSDNOG00000014778
ATGGCGGCGGAGTCGGAGTATGAGTCTGTTCTGTGTGTGAAGCCAGATGTCAGCGTCTACCGTATTCCGCCTCCGGGCTC
CAATCGCGGCTACAGGGCATCTGACTGGAAATTAGACCAACCTGATTGGACTGGTCGCCTCCGAATCACTTCAAAAGGAA
AGATTGCCTATATCAAACTTGAGGATAAAGTTTCAGGGGAGCTTTTTGCTCAAGCACCAGTAGAACAATATCCTGGCATT
GCTGTGGAGACAGTGACAGATTCCAGCCGCTATTTTGTCATTCGGATCCAGGATGGCACTGGTCGTAGTGCTTTCATTGG
CATTGGCTTCACAGATCGGGGTGATGCCTTTGACTTTAATGTCTCCTTGCAAGATCATTTCAAGTGGGTAAAGCAGGAAT
CTGAGATTTCCAAAGAATCTCAGGAAATGGACACTCGTCCCAAGTTAGATCTAGGCTTCAAGGAAGGACAGACCATAAAG
TTGAGTATTGGGAGCATTACAACCAAGAAAGGAGGAACTTCCAAGCCCAAGACCTCGGGAACTGGGGGTCTGAGCTTACT
CCCACCCCCACCTGGAGGCAAAGTCACTATTCCCCCACTATCCTCCTCAGTTGCCATCAGTAATCATGTCACCCCACCAC
CCATTCCAAAATCTAACCATGGAGGCAGTGATGCAGATATCCTTTTAGATTTGGATTCTCCTGCTCCTGTCACAACACCA
GCACCAGCTCCAGTTTCTGCAGGCAATGACTTGTGGGGAGACTTTAGCACTGCATCCAGCTCTGTTTCAAACCAGGCACC
ACAGCCATCCAACTGGGTCCAGTTCTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 24 .89 RPM
SRP012922_cerebellum 106 .81 RPM
SRP012922_heart 7 .19 RPM
SRP012922_kidney 10 .68 RPM
SRP012922_liver 14 .71 RPM
SRP012922_lung 12 .07 RPM
SRP012922_quadricep_muscle 7 .44 RPM
SRP012922_spleen 21 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016989 ortholog_one2one 1 retrogene
retro_amel_1016,
Canis familiaris ENSCAFG00000013930 ortholog_one2one 1 retrogene
retro_cfam_780,
Choloepus hoffmanni ENSCHOG00000008087 ortholog_one2one 3 retrogenes
retro_chof_1692, retro_chof_1818, retro_chof_1913,
Homo sapiens ENSG00000089818 ortholog_one2one 1 retrogene
retro_hsap_3839,
Gorilla gorilla ENSGGOG00000010233 ortholog_one2one 1 retrogene
retro_ggor_2585,
Loxodonta africana ENSLAFG00000002979 ortholog_one2one 1 retrogene
retro_lafr_632,
Mustela putorius furo ENSMPUG00000016742 ortholog_one2one 1 retrogene
retro_mputfur_361,
Nomascus leucogenys ENSNLEG00000001743 ortholog_one2one 1 retrogene
retro_nleu_1974,
Oryctolagus cuniculus ENSOCUG00000004309 ortholog_one2one 1 retrogene
retro_ocun_606,
Otolemur garnettii ENSOGAG00000006358 ortholog_one2one 1 retrogene
retro_ogar_3442,
Pongo abelii ENSPPYG00000004238 ortholog_one2one 1 retrogene
retro_pabe_3059,
Pan troglodytes ENSPTRG00000023277 ortholog_one2one 1 retrogene
retro_ptro_2615,
Rattus norvegicus ENSRNOG00000009236 ortholog_one2one 1 retrogene
retro_rnor_1806,
Ictidomys tridecemlineatus ENSSTOG00000010153 ortholog_one2one 2 retrogenes
retro_itri_1107, retro_itri_740,
Tursiops truncatus ENSTTRG00000014260 ortholog_one2one 1 retrogene
retro_ttru_1035,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_613 73.97 53.09
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2. retro_dnov_986 70.87 90.55
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Download FASTA sequences of all ENSDNOG00000014778 retrocopies