Parental gene:

KPNA7, ENSCAFG00000015125

Aliases:None
Description:karyopherin alpha 7 (importin alpha 8) [Source:HGNC Symbol;Acc:21839]
Organism:Dog (Canis familiaris)
Coordinates:6:10305404..10363663(+)


>ENSCAFG00000015125
ATGCCGACTTTACATGCTCCAGAAGAGAGGCTGAGAAAATTTAAGTACCGAGGCAAAGATGTGTCTATGAGGCGGCAACA
GAGGATAGCAGTCAGCCTGGAACTCCGGAAGGCCAAGAAAGATGAGCAGGCCTTAAAGAGAAGAAATATCGCCAATTTCT
CCACTGATCCAGCTTCTGAACAACCAACTAAAGGGGTCAGCCTCACCCTGCAAGAAATAATCAATGGTGTGAATACCTCA
GATCCAGACCTATGTTTCCAGGCCACCCAGGCAGCCAGGAAAATGCTGTCCCAGGAAAAGAACCCTCCTCTAAAACTGAT
TGTTGAAGCAGGGCTCATTCCCAGGCTGGTGGAGTTCCTGAAGTTGTCACCTCATCCCTGCTTACAGTTCGAGGCAGCCT
GGGCTCTGACCAACATTGCTTCAGGGACTTCCGAGCAGACTCAAGCTGTTGTGGAAGGTGGGGCCATACAACCTTTGGTT
GAGCTCCTGTCTTCCCCCCACATGACTGTGTGCGAGCAGGCAGTATGGGCCCTTGGTAATATAGCAGGTGATGGCTCAGA
ATTCAGAGACATCGTTATCTCGAGCAATGCCATTCCACATCTGCTGGCCCTGGTTTCATCAACCATACCAATCACGTTTC
TGCGGAATATCACGTGGACCTTGTCCAACCTGTGCCGAAACAAAAATCCTTACCCTTGCAAGACAGCCGTGAAGCAAATG
TTGCCTGTCCTGTCCCACCTCCTGCAGCACCAAGACAGTGAGGTTCTCTCGGATACCTGCTGGGCCCTGTCCTACCTCAC
CGATGGCTGCAATGAGCGCATCGGCCAAGTGGTCAACACAGGGGTCCTGCCCAGGCTGGTCCAGCTTATGAGCAGCTCAG
AGCTCAATGTCTTGACCCCCTCTCTCCGCACAATTGGGAACATCGTCACAGGAACGGATTACCAGACCCAGATGGCCATT
GACGCGGGCATGCTGAACGTGCTGCCCCAACTCCTGATGCACCCCAAGTCCTCCATCCAGAAGGAGGCAGCTTGGGCCTT
GAGCAATGTGGCTGCAGGGCCCTGCCAACACATCCAGCGGCTGATCGCTTGCGGCATGCTGCCTCCCTTGGTGGCTCTGC
TAAAAAATGGAGAATTTAAAGTCCAGAAAGAGGCTGTTTGGATCGTGGCTAACTTCACAACTGGAGGCACCATAGACCAG
TTGATCCACCTTGTCCACTCTGGAGTCCTGGAGCCACTAGTGAATCTGCTTACCATACAAGACACCAAAATTGTTATCAT
CATCCTTGACATTATCTCTTTTATCCTCCAGGCAGCAGAGAAGCTTTCAGAGAAGGAAAATCTGTGTCTTCTGATAGAAG
AAATTGGTGGCATTGATAAAATTGAGGCTTTGCAACTTCATGAGAATCCTCAGGTTGCCCTGACTGCTTTGAACATTATC
GAGAACCATTTTTGTGAGGGAGAAGAAAGTGGTGCAATATTACCAGCCCTGGACCAAGATAATGAATTCTTAAACCGCTT
AACAAAAAAACACCAAGGCCCCACGACTTCTAAACAAAGGACCAAACCCTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 0 .42 RPM
SRP017611_brain 0 .56 RPM
SRP017611_kidney 0 .00 RPM
SRP017611_liver 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000011598 within_species_paralog 2 retrogenes
retro_cfam_648, retro_cfam_90,
Choloepus hoffmanni ENSCHOG00000004243 ortholog_one2one 1 retrogene
retro_chof_805,
Callithrix jacchus ENSCJAG00000015943 ortholog_one2one 1 retrogene
retro_cjac_2964,
Equus caballus ENSECAG00000000554 ortholog_one2one 1 retrogene
retro_ecab_981,
Echinops telfairi ENSETEG00000000096 ortholog_one2one 1 retrogene
retro_etel_1548,
Homo sapiens ENSG00000185467 ortholog_one2one 1 retrogene
retro_hsap_3337,
Mus musculus ENSMUSG00000038770 ortholog_one2one 2 retrogenes
retro_mmus_2844, retro_mmus_3301,
Nomascus leucogenys ENSNLEG00000010827 ortholog_one2one 1 retrogene
retro_nleu_1680,
Otolemur garnettii ENSOGAG00000031106 ortholog_one2many 3 retrogenes
retro_ogar_1289, retro_ogar_3237, retro_ogar_353,
Ochotona princeps ENSOPRG00000015434 ortholog_one2one 2 retrogenes
retro_opri_1101, retro_opri_118,
Pongo abelii ENSPPYG00000017369 ortholog_one2one 1 retrogene
retro_pabe_2750,
Pan troglodytes ENSPTRG00000019446 ortholog_one2one 2 retrogenes
retro_ptro_102, retro_ptro_2142,
Tupaia belangeri ENSTBEG00000009007 ortholog_one2one 3 retrogenes
retro_tbel_1475, retro_tbel_3862, retro_tbel_3962,
Tursiops truncatus ENSTTRG00000002998 ortholog_one2one 2 retrogenes
retro_ttru_1426, retro_ttru_430,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_459 90.53 50.29
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2. retro_cfam_861 94.28 56.79
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Download FASTA sequences of all ENSCAFG00000015125 retrocopies