Parental gene:

FAM96A, ENSCAFG00000017035

Aliases:None
Description:family with sequence similarity 96, member A [Source:HGNC Symbol;Acc:26235]
Organism:Dog (Canis familiaris)
Coordinates:30:28581941..28597677(-)


>ENSCAFG00000017035
ATGAGGATGGAGCGGGTGTCCGGGCTGCTCTCCTGGACGCTGAGCAGAGTACTGTGGCTCTCCGGCCTCTTTGAGCGGGG
AGCTGCCCGGCAGCCCCGGATCATGGAAGAGAAAGCGCTAGAGGTTTATGATTTGATTCGAACTATCCGGGACCCAGAGA
AGCCCAATACTTTAGAAGAACTGGAAGTGGTGACGGAAAGTAGTGTGGAGGTTCAGGAAATAAATGAAGAAGACTATTTG
GTTATTATCAGGTTCACACCAACAGTACCTCACTGCTCTTTGGCAACCCTTATTGGGCTGTGCTTAAGAGTAAAACTTCA
GCGGTGTTTACCATTTAAACATAAGTTGGAAATCTACATTTCTGAAGGAACCCACTCAACAGAGGAAGACATCAACAAGC
AGATAAATGACAAAGAGCGAGTGGCAGCTGCAATGGAAAACCCCAATCTACGGGAAATTGTGGAACAGTGTGTCCTTGAA
CCTGACTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 21 .13 RPM
SRP017611_brain 14 .61 RPM
SRP017611_kidney 88 .03 RPM
SRP017611_liver 49 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002448 ortholog_one2one 1 retrogene
retro_amel_1707,
Bos taurus ENSBTAG00000002012 ortholog_one2one 2 retrogenes
retro_btau_509, retro_btau_984,
Canis familiaris ENSCAFG00000020394 within_species_paralog 2 retrogenes
retro_cfam_479, retro_cfam_802,
Callithrix jacchus ENSCJAG00000004834 ortholog_one2one 1 retrogene
retro_cjac_1751,
Equus caballus ENSECAG00000010303 ortholog_one2one 1 retrogene
retro_ecab_364,
Erinaceus europaeus ENSEEUG00000000854 ortholog_one2one 1 retrogene
retro_eeur_323,
Felis catus ENSFCAG00000004178 ortholog_one2one 1 retrogene
retro_fcat_1379,
Homo sapiens ENSG00000166797 ortholog_one2one 2 retrogenes
retro_hsap_2763, retro_hsap_522,
Gorilla gorilla ENSGGOG00000016550 ortholog_one2one 2 retrogenes
retro_ggor_1921, retro_ggor_481,
Loxodonta africana ENSLAFG00000011114 ortholog_one2one 1 retrogene
retro_lafr_758,
Macropus eugenii ENSMEUG00000005979 ortholog_one2one 2 retrogenes
retro_meug_471, retro_meug_85,
Microcebus murinus ENSMICG00000011072 ortholog_one2one 1 retrogene
retro_mmur_233,
Myotis lucifugus ENSMLUG00000028233 ortholog_one2many 2 retrogenes
retro_mluc_578, retro_mluc_893,
Mustela putorius furo ENSMPUG00000000605 ortholog_one2one 1 retrogene
retro_mputfur_722,
Mus musculus ENSMUSG00000032381 ortholog_one2one 1 retrogene
retro_mmus_1919,
Nomascus leucogenys ENSNLEG00000026932 ortholog_one2one 3 retrogenes
retro_nleu_156, retro_nleu_2577, retro_nleu_667,
Ochotona princeps ENSOPRG00000015229 ortholog_one2one 5 retrogenes
retro_opri_476, retro_opri_522, retro_opri_828, retro_opri_84, retro_opri_999,
Pongo abelii ENSPPYG00000006544 ortholog_one2one 1 retrogene
retro_pabe_224,
Pan troglodytes ENSPTRG00000007153 ortholog_one2one 2 retrogenes
retro_ptro_1870, retro_ptro_390,
Sorex araneus ENSSARG00000002068 ortholog_one2one 3 retrogenes
retro_sara_54, retro_sara_597, retro_sara_742,
Tarsius syrichta ENSTSYG00000004186 ortholog_one2one 2 retrogenes
retro_tsyr_195, retro_tsyr_62,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_439 80.58 83.95
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2. retro_cfam_1450 65.71 64.20
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Download FASTA sequences of all ENSCAFG00000017035 retrocopies