RetrogeneDB ID: | retro_cfam_1450 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 31:18671142..18671446(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM96A | ||
Ensembl ID: | ENSCAFG00000017035 | ||
Aliases: | None | ||
Description: | family with sequence similarity 96, member A [Source:HGNC Symbol;Acc:26235] |
Percent Identity: | 65.71 % |
Parental protein coverage: | 64.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EELEVVTESSVEVQEINEEDYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKH-KLEIYISEGTHST |
EELEV...SSVEV.E.NE.DYLVII.F..T.PHCSL.TL.GLCLRVKLQ....FKH.KLEI..SE.THST | |
Retrocopy | EELEVARKSSVEVPERNE-DYLVIIKFMLTIPHCSLTTLSGLCLRVKLQQA--FKH>KLEICFSEETHST |
Parental | EEDINKQINDKERVAAAMENPNLREIVEQCVLEPD |
EE..NKQIND.E.V.A..E.PNL.EI......EP. | |
Retrocopy | EENLNKQINDIEQVTATVETPNLQEIMKPYIFEPN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 21 .13 RPM |
SRP017611_brain | 0 .00 RPM | 14 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 88 .03 RPM |
SRP017611_liver | 0 .00 RPM | 49 .96 RPM |