Parental gene: | ENSCJAG00000000319 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:42402207..42424425(+) |
>ENSCJAG00000000319
ATGGCTTCCAAAAGAGCTCTGGTCATCCTGGCTAAAGGAGCGGAGGAAATGGAGACCGTCATCCCTGTAGATGTCATGAG
GCGAGCTGGGATAAAGGTCACCGTTGCAGGTCTGGCTGGAAAAGACCCAGTACAGTGTAGCCGTGATGTCATGATTTGTC
CTGATGCCAGTCTTGAAGATGCAAAAAAAGAGGGACCATATGACGTGGTGGTTCTACCAGGAGGTAATCTGGGTGCACAG
AATTTATCTGAGTCTGCTGCTGTGAAGGAGATACTGAAGGAACAGGAAAACCGGAAGGGCCTGATAGCCGCCATCTGTGC
AGGTCCTACTGCTCTGTTGGCTCATGAAATAGGTTTTGGAAGTAAAGTTACAACACATCCGCTTGCTAAAGACAAAATGA
TGAACGGAGGTCATTACACCTACTCTGAGAATCGGGTGGAAAAGGACGGCCTGATTCTTACAAGCCGTGGGCCTGGGACC
AGCTTTGAGTTTGCACTTGCAATTGTTGAAGCCCTGAACGGCAAGGAAATGGCGGCTCAAGTGAAGGCTCCACTTGTTCT
TAAAGACTAG
ATGGCTTCCAAAAGAGCTCTGGTCATCCTGGCTAAAGGAGCGGAGGAAATGGAGACCGTCATCCCTGTAGATGTCATGAG
GCGAGCTGGGATAAAGGTCACCGTTGCAGGTCTGGCTGGAAAAGACCCAGTACAGTGTAGCCGTGATGTCATGATTTGTC
CTGATGCCAGTCTTGAAGATGCAAAAAAAGAGGGACCATATGACGTGGTGGTTCTACCAGGAGGTAATCTGGGTGCACAG
AATTTATCTGAGTCTGCTGCTGTGAAGGAGATACTGAAGGAACAGGAAAACCGGAAGGGCCTGATAGCCGCCATCTGTGC
AGGTCCTACTGCTCTGTTGGCTCATGAAATAGGTTTTGGAAGTAAAGTTACAACACATCCGCTTGCTAAAGACAAAATGA
TGAACGGAGGTCATTACACCTACTCTGAGAATCGGGTGGAAAAGGACGGCCTGATTCTTACAAGCCGTGGGCCTGGGACC
AGCTTTGAGTTTGCACTTGCAATTGTTGAAGCCCTGAACGGCAAGGAAATGGCGGCTCAAGTGAAGGCTCCACTTGTTCT
TAAAGACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 28 .95 RPM |
| SRP051959_skeletal_muscle | 107 .42 RPM |
| SRP051959_lymph_node | 22 .60 RPM |
| SRP051959_lung | 21 .36 RPM |
| SRP051959_liver | 49 .17 RPM |
| SRP051959_kidney | 52 .23 RPM |
| SRP051959_heart | 43 .01 RPM |
| SRP051959_colon | 21 .19 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003703 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000019674 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000004364 | ortholog_one2many | 7 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000013141 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000010915 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000116288 | ortholog_one2many | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000012105 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000008470 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000008790 | ortholog_one2many | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000016511 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000002151 | ortholog_one2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000001925 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000000102 | ortholog_one2many | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000018289 | ortholog_many2many | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000009474 | ortholog_one2many | 13 retrogenes | |
| Tarsius syrichta | ENSTSYG00000001455 | ortholog_one2many | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000011076 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1348 | 90.96 | 99.47 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2729 | 93.75 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3210 | 83.20 | 66.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_4225 | 91.01 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000000319 retrocopies