Parental gene: | CHORDC1, ENSCJAG00000000903 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 11:47808044..47831013(+) |
>ENSCJAG00000000903
ATGTCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTTGATCCTGAAACCAATTCCGATGAGGCTTGCACATACCA
CCCAGGTGTTCCAGTCTTTCATGATGCCTTAAAGGGTTGGTCGTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGTATTGTTGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCTGAGCCAGTCAAACCTGAAGTCAAGACTACT
GAGAAGAAGGAACTATCTGATTTGAAACCGAAATTTCGGGAACACATCATTCAAGCCCCTAAGCCAGTAGAAGCTATAAA
AAGGCCAAGCCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTGTCTTCAGGGAATGAAGAAGATAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGGACTTCATGTAAGAATGGA
GGGTGTTCAAAGACATATCGGGGTCTAGAGAGTCTAGAAGAAGTCTGTGTATATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAAGAGGGCTGTACAACAG
GGAAACACATGTGGACTAAAAAGGATGCTGGGAAGAAAGTTGTTCCATGTAGACATGACTGGCATCAGACTGGAGGTGAA
GTTACCATTTCAGTATATGCTAAAAATTCACTTCCAGAACTTAGTCGAGTAGAAGCAAATAGCACATTGGTAAATGTGCA
CATTGTATTTGAAGGAGAGAAGGAATTTGATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAA
CTATGACTGCAACAAAGATTGAGATCACTATGAGAAAAGCTGAACCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCG
AAAAAGCAGGAAAAACAAAAAGACGACACAACCGATTGA
ATGTCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTTGATCCTGAAACCAATTCCGATGAGGCTTGCACATACCA
CCCAGGTGTTCCAGTCTTTCATGATGCCTTAAAGGGTTGGTCGTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGTATTGTTGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCTGAGCCAGTCAAACCTGAAGTCAAGACTACT
GAGAAGAAGGAACTATCTGATTTGAAACCGAAATTTCGGGAACACATCATTCAAGCCCCTAAGCCAGTAGAAGCTATAAA
AAGGCCAAGCCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTGTCTTCAGGGAATGAAGAAGATAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGGACTTCATGTAAGAATGGA
GGGTGTTCAAAGACATATCGGGGTCTAGAGAGTCTAGAAGAAGTCTGTGTATATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAAGAGGGCTGTACAACAG
GGAAACACATGTGGACTAAAAAGGATGCTGGGAAGAAAGTTGTTCCATGTAGACATGACTGGCATCAGACTGGAGGTGAA
GTTACCATTTCAGTATATGCTAAAAATTCACTTCCAGAACTTAGTCGAGTAGAAGCAAATAGCACATTGGTAAATGTGCA
CATTGTATTTGAAGGAGAGAAGGAATTTGATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAA
CTATGACTGCAACAAAGATTGAGATCACTATGAGAAAAGCTGAACCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCG
AAAAAGCAGGAAAAACAAAAAGACGACACAACCGATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 56 .51 RPM |
| SRP051959_skeletal_muscle | 20 .59 RPM |
| SRP051959_lymph_node | 79 .59 RPM |
| SRP051959_lung | 57 .20 RPM |
| SRP051959_liver | 35 .61 RPM |
| SRP051959_kidney | 26 .71 RPM |
| SRP051959_heart | 24 .08 RPM |
| SRP051959_colon | 28 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000013104 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000019389 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000110172 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027396 | ortholog_one2many | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000017340 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005209 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000007079 | ortholog_one2one | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000014147 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000003523 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000003764 | ortholog_one2one | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000004164 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000002910 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000004205 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_815 | 78.81 | 99.70 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2220 | 58.48 | 66.27 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2927 | 77.74 | 86.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_4147 | 83.16 | 87.35 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000000903 retrocopies