Parental gene: | CHORDC1, ENSGGOG00000027396 |
| Aliases: | None |
| Description: | None |
| Organism: | Gorilla (Gorilla gorilla) |
| Coordinates: | 11:87473651..87500408(-) |
>ENSGGOG00000027396
ATGGCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTCGATCCTGAGACCAATTCCGACGATGCTTGCACATACCA
CCCAGGTGTTCCGGTCTTTCATGATGCATTAAAGGGTTGGTCTTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGCATTGTAGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCTGAGCCAGTCAAACCTGAAGTCAAGAATACT
GAGAAGAAGGAACTATCTGAATTAAAACCCAAATTTCAGGAACACATCATTCAAGCCCCTAAGCCAGTAGAAGCAATAAA
AAGACCAAGCCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTGTCATCAGGGAATGAAGAAAATAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGGACCTCATGTAAGAATGGA
GGGTGTTCAAAGACATACCGGGGTCCAGAGAGTCTAGAAGAAGTCTGTGTGTATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAAGAGGGCTGTACAAAAG
GGAAACACATGTGGACTAAAAAAGATGCTGGGAAAAAAGTTGTTCCATGTAGACATGACTGGCATCAGACTGGAGGTGAA
GTAACCATTTCAGTATATGCTAAAAACTCACTTCCAGAACTTAGCCGAGTAGAAGCAAATAGCACATTGTTAAATGTGCA
TATTGTATTTGAAGGAGAGAAGGAATTTGATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAA
CTATGACTGCAACAAAGATTGAAATCACTATGAGAAAAGCTGAACCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCT
AAAAAGCAGGAAAAACAAAAAGATGACACAACAGATTGA
ATGGCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTCGATCCTGAGACCAATTCCGACGATGCTTGCACATACCA
CCCAGGTGTTCCGGTCTTTCATGATGCATTAAAGGGTTGGTCTTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGCATTGTAGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCTGAGCCAGTCAAACCTGAAGTCAAGAATACT
GAGAAGAAGGAACTATCTGAATTAAAACCCAAATTTCAGGAACACATCATTCAAGCCCCTAAGCCAGTAGAAGCAATAAA
AAGACCAAGCCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTGTCATCAGGGAATGAAGAAAATAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGGACCTCATGTAAGAATGGA
GGGTGTTCAAAGACATACCGGGGTCCAGAGAGTCTAGAAGAAGTCTGTGTGTATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAAGAGGGCTGTACAAAAG
GGAAACACATGTGGACTAAAAAAGATGCTGGGAAAAAAGTTGTTCCATGTAGACATGACTGGCATCAGACTGGAGGTGAA
GTAACCATTTCAGTATATGCTAAAAACTCACTTCCAGAACTTAGCCGAGTAGAAGCAAATAGCACATTGTTAAATGTGCA
TATTGTATTTGAAGGAGAGAAGGAATTTGATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAA
CTATGACTGCAACAAAGATTGAAATCACTATGAGAAAAGCTGAACCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCT
AAAAAGCAGGAAAAACAAAAAGATGACACAACAGATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 22 .78 RPM |
| SRP007412_cerebellum | 9 .53 RPM |
| SRP007412_heart | 3 .50 RPM |
| SRP007412_kidney | 11 .49 RPM |
| SRP007412_liver | 11 .00 RPM |
| SRP007412_testis | 29 .42 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000000903 | ortholog_one2many | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000013104 | ortholog_one2many | 2 retrogenes | |
| Felis catus | ENSFCAG00000019389 | ortholog_many2many | 1 retrogene | |
| Homo sapiens | ENSG00000110172 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000017340 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005209 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000007079 | ortholog_one2one | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000014147 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000003523 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000003764 | ortholog_one2one | 5 retrogenes | |
| Pan troglodytes | ENSPTRG00000004164 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000002910 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000004205 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ggor_1117 | 89.76 | 61.75 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ggor_1118 | 88.18 | 65.96 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ggor_1679 | 88.04 | 55.42 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSGGOG00000027396 retrocopies