Parental gene:

CHORDC1, ENSGGOG00000027396

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:11:87473651..87500408(-)


>ENSGGOG00000027396
ATGGCCTTGCTGTGCTACAACCGGGGCTGCGGTCAGCGCTTCGATCCTGAGACCAATTCCGACGATGCTTGCACATACCA
CCCAGGTGTTCCGGTCTTTCATGATGCATTAAAGGGTTGGTCTTGCTGTAAGAGAAGAACAACTGATTTTTCTGATTTCT
TAAGCATTGTAGGCTGTACAAAAGGTAGACATAATAGTGAGAAGCCACCTGAGCCAGTCAAACCTGAAGTCAAGAATACT
GAGAAGAAGGAACTATCTGAATTAAAACCCAAATTTCAGGAACACATCATTCAAGCCCCTAAGCCAGTAGAAGCAATAAA
AAGACCAAGCCCAGATGAACCAATGACAAATTTGGAATTAAAAATATCTGCCTCCCTAAAACAAGCACTTGATAAACTTA
AACTGTCATCAGGGAATGAAGAAAATAAGAAAGAAGAAGACAATGATGAAATTAAGATTGGGACCTCATGTAAGAATGGA
GGGTGTTCAAAGACATACCGGGGTCCAGAGAGTCTAGAAGAAGTCTGTGTGTATCATTCTGGAGTACCTATTTTCCATGA
GGGGATGAAATACTGGAGCTGTTGTAGAAGAAAAACTTCTGATTTTAATACATTCTTAGCCCAAGAGGGCTGTACAAAAG
GGAAACACATGTGGACTAAAAAAGATGCTGGGAAAAAAGTTGTTCCATGTAGACATGACTGGCATCAGACTGGAGGTGAA
GTAACCATTTCAGTATATGCTAAAAACTCACTTCCAGAACTTAGCCGAGTAGAAGCAAATAGCACATTGTTAAATGTGCA
TATTGTATTTGAAGGAGAGAAGGAATTTGATCAAAATGTGAAATTATGGGGTGTGATTGATGTAAAGCGAAGTTATGTAA
CTATGACTGCAACAAAGATTGAAATCACTATGAGAAAAGCTGAACCGATGCAGTGGGCAAGCCTTGAACTGCCTGCAGCT
AAAAAGCAGGAAAAACAAAAAGATGACACAACAGATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 22 .78 RPM
SRP007412_cerebellum 9 .53 RPM
SRP007412_heart 3 .50 RPM
SRP007412_kidney 11 .49 RPM
SRP007412_liver 11 .00 RPM
SRP007412_testis 29 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000903 ortholog_one2many 4 retrogenes
retro_cjac_2220, retro_cjac_2927, retro_cjac_4147, retro_cjac_815,
Echinops telfairi ENSETEG00000013104 ortholog_one2many 2 retrogenes
retro_etel_1713, retro_etel_1860,
Felis catus ENSFCAG00000019389 ortholog_many2many 1 retrogene
retro_fcat_137,
Homo sapiens ENSG00000110172 ortholog_one2one 3 retrogenes
retro_hsap_1452, retro_hsap_1903, retro_hsap_2252,
Loxodonta africana ENSLAFG00000017340 ortholog_one2many 1 retrogene
retro_lafr_401,
Macaca mulatta ENSMMUG00000005209 ortholog_one2one 2 retrogenes
retro_mmul_1024, retro_mmul_1923,
Nomascus leucogenys ENSNLEG00000007079 ortholog_one2one 5 retrogenes
retro_nleu_1085, retro_nleu_1232, retro_nleu_1320, retro_nleu_752, retro_nleu_981,
Oryctolagus cuniculus ENSOCUG00000014147 ortholog_one2many 1 retrogene
retro_ocun_1595,
Otolemur garnettii ENSOGAG00000003523 ortholog_one2many 1 retrogene
retro_ogar_2724,
Pongo abelii ENSPPYG00000003764 ortholog_one2one 5 retrogenes
retro_pabe_1199, retro_pabe_1554, retro_pabe_1734, retro_pabe_1959, retro_pabe_461,
Pan troglodytes ENSPTRG00000004164 ortholog_one2one 3 retrogenes
retro_ptro_1253, retro_ptro_1595, retro_ptro_988,
Tupaia belangeri ENSTBEG00000002910 ortholog_one2many 1 retrogene
retro_tbel_2891,
Tarsius syrichta ENSTSYG00000004205 ortholog_one2many 1 retrogene
retro_tsyr_1581,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_1117 89.76 61.75
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2. retro_ggor_1118 88.18 65.96
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3. retro_ggor_1679 88.04 55.42
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Download FASTA sequences of all ENSGGOG00000027396 retrocopies