Parental gene: | CCNE1, ENSCJAG00000001857 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 22:24428242..24442104(+) |
>ENSCJAG00000001857
ATGCCGAGGGAGCGCAGGGAGCGGGATGCGAAGGAGCGGGACACCATGAAGGAGGACGGCGGCGCGGAGTTCTCGGCTCG
CTCCAGGAAGAGGAAGGCAAACGTGGCCGTTTTTTTGCAGGATCCAGATGAAGAAATGGCCAAAATCGACAAGACAGCGA
GGGACCAATGTGGAAGCCAGGCTTGGGACAGTAATGCAGTCTGTGCGGACCCCTGCTCCCTAATCCCCACACCTGACAAG
GAAGAAGATGAGCTGGTTTACCCAAACTCAATGTGCAAGCCTCGGCATATCGCACCGTCCAGAGGTTCCCCACTGCCTGT
ACTGAGCTGGGCAAATAGAGAGGAAGTCTGGAAAATCATGTTAAACAAGGAAAAGTCATACTTAAGGGATAAGCACTTTC
TTGAGCAACACCCTCTTCTGCAGCCAAAAATGCGAGCAATTCTTCTAGATTGGTTAATGGAGGTGTGTGAAGTCTATAAG
CTTCACAGGGAGACCTTTTACTTGGCACAAGATTTCTTTGACCGGTATATGGCGACACAAGAAAATGTCGTAAAAACTCT
TTTACAGCTTATTGGGATTTCATCTTTATTTATAGCAGCCAAGCTTGAGGAAATCTATCCTCCAAAGTTGCACCAGTTTG
CCTATGTGACAGACGGAGCGTGTTCAGGAGATGAAATTCTTACCATGGAGTTAATGATTATGAAGGCCCTTAAGTGGCGT
TTAAGTCCCCTGACTATTGTGTCCTGGCTGAATGTATACATGCAGGTTGCATATCTAAATGACATCCATGAGGTGCTACT
GCCGCAGTATCCCCAGCAAACCTTTATACAGATTGCAGAGCTGTTGGATCTCTGTGTCCTGGATGTCGACTGCCTCGAAT
TTCCTTACGGTATACTCGCTGCTTCGGCCGTGTATCATTTCTCTTCATCTGAATTGATGGAAAAGGTTTCAGGATATGAA
TGGTGCGACATAGAGAACTGTGCCAAGTGGATGGTTCCATTTGCCATGGTTATAAGGGAGACGGGGACCTCAAAACTGAA
GCACTTCAGGGGCGTCGCTGATGAAGATGCGCACAACATACAGACCCACAGAGACAGCTTGGATTTGCTGGACAAAGCCA
GAGCAAAGAAAGCCATGTTGTCTGAACAAAATAGGGCTTCTCCTCTCCCCAGTGGGCTCCTCACCCCTCCACAGAGCAGT
AAGAAGCAGAGCAACGGGCCGGAAATGGCATGA
ATGCCGAGGGAGCGCAGGGAGCGGGATGCGAAGGAGCGGGACACCATGAAGGAGGACGGCGGCGCGGAGTTCTCGGCTCG
CTCCAGGAAGAGGAAGGCAAACGTGGCCGTTTTTTTGCAGGATCCAGATGAAGAAATGGCCAAAATCGACAAGACAGCGA
GGGACCAATGTGGAAGCCAGGCTTGGGACAGTAATGCAGTCTGTGCGGACCCCTGCTCCCTAATCCCCACACCTGACAAG
GAAGAAGATGAGCTGGTTTACCCAAACTCAATGTGCAAGCCTCGGCATATCGCACCGTCCAGAGGTTCCCCACTGCCTGT
ACTGAGCTGGGCAAATAGAGAGGAAGTCTGGAAAATCATGTTAAACAAGGAAAAGTCATACTTAAGGGATAAGCACTTTC
TTGAGCAACACCCTCTTCTGCAGCCAAAAATGCGAGCAATTCTTCTAGATTGGTTAATGGAGGTGTGTGAAGTCTATAAG
CTTCACAGGGAGACCTTTTACTTGGCACAAGATTTCTTTGACCGGTATATGGCGACACAAGAAAATGTCGTAAAAACTCT
TTTACAGCTTATTGGGATTTCATCTTTATTTATAGCAGCCAAGCTTGAGGAAATCTATCCTCCAAAGTTGCACCAGTTTG
CCTATGTGACAGACGGAGCGTGTTCAGGAGATGAAATTCTTACCATGGAGTTAATGATTATGAAGGCCCTTAAGTGGCGT
TTAAGTCCCCTGACTATTGTGTCCTGGCTGAATGTATACATGCAGGTTGCATATCTAAATGACATCCATGAGGTGCTACT
GCCGCAGTATCCCCAGCAAACCTTTATACAGATTGCAGAGCTGTTGGATCTCTGTGTCCTGGATGTCGACTGCCTCGAAT
TTCCTTACGGTATACTCGCTGCTTCGGCCGTGTATCATTTCTCTTCATCTGAATTGATGGAAAAGGTTTCAGGATATGAA
TGGTGCGACATAGAGAACTGTGCCAAGTGGATGGTTCCATTTGCCATGGTTATAAGGGAGACGGGGACCTCAAAACTGAA
GCACTTCAGGGGCGTCGCTGATGAAGATGCGCACAACATACAGACCCACAGAGACAGCTTGGATTTGCTGGACAAAGCCA
GAGCAAAGAAAGCCATGTTGTCTGAACAAAATAGGGCTTCTCCTCTCCCCAGTGGGCTCCTCACCCCTCCACAGAGCAGT
AAGAAGCAGAGCAACGGGCCGGAAATGGCATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 0 .74 RPM |
| SRP051959_skeletal_muscle | 0 .55 RPM |
| SRP051959_lymph_node | 1 .23 RPM |
| SRP051959_lung | 0 .75 RPM |
| SRP051959_liver | 0 .19 RPM |
| SRP051959_kidney | 0 .29 RPM |
| SRP051959_heart | 0 .65 RPM |
| SRP051959_colon | 1 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000001593 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016075 | other_paralog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000009143 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000006217 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000002855 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000001390 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3786 | 88.00 | 91.22 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3996 | 91.44 | 88.05 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001857 retrocopies