Parental gene:

CCNB1, ENSCJAG00000016075

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:137871006..137882166(-)


>ENSCJAG00000016075
ATGGCGCTCCGAGTCACCAGGAACTCGAAAATAAATGCTGAAAATACGACGAAGATCAGTATGGCAGGCGCAAAGCGCGT
GCCTATGGCCCCTGCTGCAACCTCCAAGCCCGGACTGAGGCCAAGAACAGCTCTTGGGGACATTGGTAACAAAGTCAGTG
AACAGCTACAGACCAAAATGCCTATGAAAAAGGAGGGAAAACCTTCAGCTACTGGAAAAGTTATTGCTAAAAAACTACCA
AAACCTCTGGAAAAGGTACCTATGCTGGGGCCAGTGCCGGTGTCCCAGCCAGTGCCAGAGCCAGAACCTGAGCCTGTTAA
AGAAGAAAAACTTTCGCCTGAGCCTATTTTGGTTGACACTCCCTCTCTAAGCCCAATGGAAACATCTGGATGTGCCCCTG
CAGAAGAAGACCTATGTCAGGCTTTCTCTGATGTAATTCTTGCAGTAAATGATGTGGATGCAGAAGATGGAGTGGATCCA
AACCTTTGTAGTGAATATGTGAAAGATATTTATGCTTATCTGAGACAACTTGAGGAAGAGCAAGCAGTCAGACCGAAATA
CCTACTGGGTCGGGAAGTCACTGGAAACATGAGAGCCATCCTAATTGACTGGCTAGTACAGGTCCAGATGAAATTCAGGT
TGTTGCAGGAGACCATGTACATGACTGTCTCCATTATTGATCGGTTCATGCAGAATAATTGTGTGCCCAAGAAGATGCTG
CAACTGGTTGGTGTCACTGCCATGTTTATTGCCAGCAAATATGAAGAAATGTACCCTCCAGAAATTGGTGACTTTGCTTT
TGTGACTGACAACACTTACACTAAGCACCAGATCAGACAGATGGAAATGAAGATTCTAAGAGCTTTAAACTTTGGTCTGG
GTCGGCCTCTACCTTTGCACTTCCTTCGGAGAGCATCTAAGATTGGAGAGGCTGATGTTGACCAACATACTTTGGCCAAA
TACCTGATGGAACTAACTATGTTGGACTATGATATGGTGCACTTTCCTCCTTCTCAAATTGCAGCAGGAGCTTTTTGCTT
AGCACTGAAAATTCTGGATGATGGTGAATGGACACCAACTCTACAGCATTACCTGTCATACACTGAAGAATCCCTTCTTC
CAGTTATGCAGCACCTGGCTAAGAATATAGTCATGGTAAATCAAGGGCTTACAAAGCACATGACTATCAAGAACAAGTAT
GCTACGTCGAAACATGCTAAGATCAGCACTCTAGCACAGCTGAATTCTGCACTAGTTCAAGATTTAGCCAAGGCTGTGGC
AAAGGTGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 4 .89 RPM
SRP051959_skeletal_muscle 0 .66 RPM
SRP051959_lymph_node 4 .57 RPM
SRP051959_lung 2 .96 RPM
SRP051959_liver 0 .80 RPM
SRP051959_kidney 1 .35 RPM
SRP051959_heart 1 .35 RPM
SRP051959_colon 16 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014239 possible_ortholog 2 retrogenes
retro_btau_1317, retro_btau_600,
Canis familiaris ENSCAFG00000007705 ortholog_one2many 1 retrogene
retro_cfam_213,
Callithrix jacchus ENSCJAG00000001593 other_paralog 1 retrogene
retro_cjac_3884,
Callithrix jacchus ENSCJAG00000001857 other_paralog 2 retrogenes
retro_cjac_3786, retro_cjac_3996,
Cavia porcellus ENSCPOG00000014629 ortholog_one2many 1 retrogene
retro_cpor_13,
Erinaceus europaeus ENSEEUG00000005724 possible_ortholog 2 retrogenes
retro_eeur_386, retro_eeur_548,
Felis catus ENSFCAG00000001572 ortholog_one2one 1 retrogene
retro_fcat_840,
Mustela putorius furo ENSMPUG00000014648 ortholog_one2many 1 retrogene
retro_mputfur_58,
Mus musculus ENSMUSG00000041431 ortholog_one2one 5 retrogenes
retro_mmus_1170, retro_mmus_1550, retro_mmus_2508, retro_mmus_2615, retro_mmus_3023,
Procavia capensis ENSPCAG00000002451 ortholog_one2many 1 retrogene
retro_pcap_176,
Rattus norvegicus ENSRNOG00000018635 ortholog_one2one 2 retrogenes
retro_rnor_568, retro_rnor_814,
Sarcophilus harrisii ENSSHAG00000007685 ortholog_one2many 1 retrogene
retro_shar_290,
Tupaia belangeri ENSTBEG00000011817 ortholog_one2many 4 retrogenes
retro_tbel_1185, retro_tbel_3200, retro_tbel_4185, retro_tbel_4531,
Tarsius syrichta ENSTSYG00000008928 possible_ortholog 1 retrogene
retro_tsyr_232,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4137 97.91 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000016075 retrocopies