Parental gene:

COPS8, ENSCJAG00000002267

Aliases:None
Description:COP9 signalosome subunit 8 [Source:HGNC Symbol;Acc:24335]
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:153551794..153565311(+)


>ENSCJAG00000002267
ATGCCAGTGGCGGTGATGGCGGAAAGTGCCTTCAGTTTTAAAAAGTTGCTGGATCAGTGCGAGAACCAGGAGCTCGAGGC
CCCTGGAGGAATTGCTACACCCCCAGTGTATGGTCAGCTTCTAGCTTTATATTTGCTTCATAATGACATGAATAATGCAA
GATACCTTTGGAAAAGAATACCACCTGCTATAAAATCTGCAAATTCTGAACTTGGGGGAATTTGGTCAGTAGGACAAAGA
ATCTGGCAGAGAGATTTCCCTGGGATCTATACAACCATCAACGCTCACCAGTGGTCTGAGACGGTCCAGCCAATTATGGA
AGCACTTAGAGATGCAACAAGGAGACGAGCCTTCGCCCTGGTCTCACAAGCGTATACGTCAATAATTGCTGATGATTTCG
CAGCCTTCGTGGGACTCCCTGTAGAAGAGGCTGTGAAAGGTATATTAGAACAAGGATGGCAAGCTGATTCCACCACAAGA
ATGGTTCTGCCCAGAAAGCCAGTTGCAGGGGCCCTCGATGTTTCCTTTAACAAGTTTATTCCCTTATCAGAGCCTGCTCC
AGTTCCCCCAATACCCAATGAACAGCAGTTAGCCAGGCTGACGGATTATGTGGCTTTCCTTGAAAACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 22 .46 RPM
SRP051959_skeletal_muscle 55 .99 RPM
SRP051959_lymph_node 25 .48 RPM
SRP051959_lung 26 .53 RPM
SRP051959_liver 22 .16 RPM
SRP051959_kidney 26 .93 RPM
SRP051959_heart 26 .77 RPM
SRP051959_colon 18 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005854 ortholog_one2one 3 retrogenes
retro_btau_1315, retro_btau_1401, retro_btau_1402,
Canis familiaris ENSCAFG00000030168 possible_ortholog 1 retrogene
retro_cfam_1327,
Dasypus novemcinctus ENSDNOG00000015309 ortholog_one2many 5 retrogenes
retro_dnov_1157, retro_dnov_1306, retro_dnov_149, retro_dnov_1701, retro_dnov_527,
Homo sapiens ENSG00000198612 ortholog_one2one 2 retrogenes
retro_hsap_2657, retro_hsap_4869,
Macropus eugenii ENSMEUG00000008189 ortholog_one2many 3 retrogenes
retro_meug_583, retro_meug_609, retro_meug_701,
Macaca mulatta ENSMMUG00000021605 ortholog_one2one 1 retrogene
retro_mmul_2610,
Monodelphis domestica ENSMODG00000007474 ortholog_one2one 1 retrogene
retro_mdom_1295,
Mustela putorius furo ENSMPUG00000000068 possible_ortholog 1 retrogene
retro_mputfur_176,
Mus musculus ENSMUSG00000034432 ortholog_one2one 1 retrogene
retro_mmus_1812,
Nomascus leucogenys ENSNLEG00000010706 ortholog_one2one 2 retrogenes
retro_nleu_1528, retro_nleu_2002,
Oryctolagus cuniculus ENSOCUG00000007341 ortholog_one2one 4 retrogenes
retro_ocun_1549, retro_ocun_1579, retro_ocun_428, retro_ocun_550,
Pongo abelii ENSPPYG00000013308 ortholog_one2many 1 retrogene
retro_pabe_3787,
Rattus norvegicus ENSRNOG00000019635 ortholog_one2one 3 retrogenes
retro_rnor_1005, retro_rnor_1078, retro_rnor_975,
Ictidomys tridecemlineatus ENSSTOG00000022662 ortholog_one2one 4 retrogenes
retro_itri_1065, retro_itri_1383, retro_itri_1737, retro_itri_296,
Tupaia belangeri ENSTBEG00000015944 ortholog_one2one 1 retrogene
retro_tbel_4315,
Tarsius syrichta ENSTSYG00000002196 ortholog_one2one 7 retrogenes
retro_tsyr_1053, retro_tsyr_1559, retro_tsyr_165, retro_tsyr_1695, retro_tsyr_1874, retro_tsyr_448, retro_tsyr_943,
Tursiops truncatus ENSTTRG00000013614 ortholog_one2one 1 retrogene
retro_ttru_1448,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4193 72.50 94.74
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Download FASTA sequences of all ENSCJAG00000002267 retrocopies