RetrogeneDB ID: | retro_dnov_527 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | GeneScaffold_5736:11992..12409(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSDNOG00000015309 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_dnov_527
CTTGGGGGAATTTGGTCAGAAAGACAGAGAATCTGGCAGAGAGATTTCCCTGGGATCTACATGACCATCAATGCCCACCA
ATATTCCAAGACGGTTAGGCCGATCATGGAAGCACCAAGAGATGCAACAAGGAGATGAGGCTTCACCCTGGTTTCTCAGG
CATATACTTCCATAATCGCTGACGGCTTTGTAGCCTTTGTCCAGCTTCTTGTGGAAGAGGCTGTGAAAGATATTTGAGAA
CAAGGGTGGCAAGCTGACTCCACCACGAGAATGGTTATGCCCCAAACCTCTGTTGCAGAAACCCTGGATGTTTCGTTTAG
TACATTTATTCCCTTATTAAAGCCTGCCCTAGTCCCACCAATCCCCAACGAACAACAGCCAGCCAGACTGGCGGATTACA
CGGCTTTCCCTGAAAAC
CTTGGGGGAATTTGGTCAGAAAGACAGAGAATCTGGCAGAGAGATTTCCCTGGGATCTACATGACCATCAATGCCCACCA
ATATTCCAAGACGGTTAGGCCGATCATGGAAGCACCAAGAGATGCAACAAGGAGATGAGGCTTCACCCTGGTTTCTCAGG
CATATACTTCCATAATCGCTGACGGCTTTGTAGCCTTTGTCCAGCTTCTTGTGGAAGAGGCTGTGAAAGATATTTGAGAA
CAAGGGTGGCAAGCTGACTCCACCACGAGAATGGTTATGCCCCAAACCTCTGTTGCAGAAACCCTGGATGTTTCGTTTAG
TACATTTATTCCCTTATTAAAGCCTGCCCTAGTCCCACCAATCCCCAACGAACAACAGCCAGCCAGACTGGCGGATTACA
CGGCTTTCCCTGAAAAC
ORF - retro_dnov_527 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 75.54 % |
| Parental protein coverage: | 65.69 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LGGIWSVGQRIWQRDFPGIYTIINA-QWSE--QPIMEA--NATRRRAFTLVSQAYTSIIADDFAAFVGLP |
| LGGIWS..QRIWQRDFPGIY..INA.Q.S....PIMEA...ATRR..FTLVSQAYTSIIAD.F.AFV.L. | |
| Retrocopy | LGGIWSERQRIWQRDFPGIYMTINAHQYSKTVRPIMEAPRDATRR*GFTLVSQAYTSIIADGFVAFVQLL |
| Parental | VEEAVKGILEQGWQADSTTRMVMPKKPVAGALDVSFNRFIPLLEPAPVPPIPNEQQLARLTDYVAFLEN |
| VEEAVK.I.EQGWQADSTTRMVMP...VA..LDVSF..FIPLL.PA.VPPIPNEQQ.ARL.DY.AF.EN | |
| Retrocopy | VEEAVKDI*EQGWQADSTTRMVMPQTSVAETLDVSFSTFIPLLKPALVPPIPNEQQPARLADYTAFPEN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 11 .28 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 24 .47 RPM |
| SRP012922_heart | 0 .00 RPM | 9 .75 RPM |
| SRP012922_kidney | 0 .27 RPM | 8 .49 RPM |
| SRP012922_liver | 0 .00 RPM | 4 .80 RPM |
| SRP012922_lung | 0 .00 RPM | 10 .54 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 12 .98 RPM |
| SRP012922_spleen | 0 .00 RPM | 12 .71 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_527 was not experimentally validated.