Parental gene: | TARDBP, ENSCJAG00000002381 |
| Aliases: | None |
| Description: | TAR DNA binding protein [Source:HGNC Symbol;Acc:11571] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:45610460..45623289(+) |
>ENSCJAG00000002381
ATGTCTGAATATATTCGGGTAACCGAAGATGAGAACGATGAACCCATTGAAATACCATCGGAAGATGATGGGACCGTGCT
GCTGTCCACGGTTACAGCCCAGTTTCCAGGGGCCTGTGGGCTTCGCTACAGGAATCCAGTGTCTCAATGTATGAGAGGTG
TCCGGCTGGTGGAAGGAATTCTGCATGCCCCCGATGCTGGCTGGGGAAATCTGGTGTATGTTGTCAACTATCCCAAAGAT
AACAAAAGAAAAATGGATGAGACAGATGCTTCATCAGCAGTGAAAGTGAAAAGAGCAGTCCAGAAAACATCCGATTTAAT
AGTGTTGGGTCTCCCATGGAAAACAACTGAACAGGACCTGAAAGACTATTTTAGTACCTTTGGAGAAGTTCTTATGGTGC
AGGTCAAGAAAGATCTTAAGACTGGTCATTCAAAGGGGTTTGGCTTTGTTCGTTTTACGGAATATGAAACACAGGTGAAA
GTAATGTCACAGCGGCATATGATAGATGGACGGTGGTGTGACTGTAAACTTCCTAATTCTAAGCAAAGTGCAGATGAGCC
TTTGAGAAGCAGAAAAGTGTTTGTGGGGCGCTGTACAGAGGACATGACTGAGGACGAGCTGCGGCAGTTCTTCTCCCAGT
ACGGGGAGGTGATGGATGTCTTCATCCCCAAGCCGTTCAGGGCCTTTGCCTTTGTAACATTTGCAGATGATCAGATTGCG
CAATCTCTTTGTGGCGAGGACTTGATCATTAAAGGAATCAGCGTTCACATATCCAATGCCGAACCTAAGCACAATAGCAA
TAGACAGTTAGAAAGAAGTGGAAGATTTGGTGGTAATCCAGGTGGCTTTGGGAATCAGGGTGGATTTGGTAATAGTAGAG
GGGGTGGAGCTGGTTTGGGAAACAATCAAGGTAGTAATATGGGTGGTGGGATGAACTTTGGCGCATTCAGCATTAATCCA
GCCATGATGGCTGCAGCCCAGGCAGCGCTACAGAGCAGTTGGGGTATGATGGGCATGTTAGCCAGCCAGCAGAACCAGTC
AGGCCCATCGGGTAATAACCAAAGCCAAGGCAACATGCAGAGGGAGCCAAACCAGGCCTTTGGTTCTGGAAATAACTCTT
ATAGTGGTTCTAATTCTGGTGCAGCAATTGGTTGGGGATCAGCATCAAATGCAGGGTCGGGTAGTGGTTTTAATGGAGGC
TTTGGCTCAAGCATGGATTCTAAGTCTTCTGGCTGGGGAATGTAG
ATGTCTGAATATATTCGGGTAACCGAAGATGAGAACGATGAACCCATTGAAATACCATCGGAAGATGATGGGACCGTGCT
GCTGTCCACGGTTACAGCCCAGTTTCCAGGGGCCTGTGGGCTTCGCTACAGGAATCCAGTGTCTCAATGTATGAGAGGTG
TCCGGCTGGTGGAAGGAATTCTGCATGCCCCCGATGCTGGCTGGGGAAATCTGGTGTATGTTGTCAACTATCCCAAAGAT
AACAAAAGAAAAATGGATGAGACAGATGCTTCATCAGCAGTGAAAGTGAAAAGAGCAGTCCAGAAAACATCCGATTTAAT
AGTGTTGGGTCTCCCATGGAAAACAACTGAACAGGACCTGAAAGACTATTTTAGTACCTTTGGAGAAGTTCTTATGGTGC
AGGTCAAGAAAGATCTTAAGACTGGTCATTCAAAGGGGTTTGGCTTTGTTCGTTTTACGGAATATGAAACACAGGTGAAA
GTAATGTCACAGCGGCATATGATAGATGGACGGTGGTGTGACTGTAAACTTCCTAATTCTAAGCAAAGTGCAGATGAGCC
TTTGAGAAGCAGAAAAGTGTTTGTGGGGCGCTGTACAGAGGACATGACTGAGGACGAGCTGCGGCAGTTCTTCTCCCAGT
ACGGGGAGGTGATGGATGTCTTCATCCCCAAGCCGTTCAGGGCCTTTGCCTTTGTAACATTTGCAGATGATCAGATTGCG
CAATCTCTTTGTGGCGAGGACTTGATCATTAAAGGAATCAGCGTTCACATATCCAATGCCGAACCTAAGCACAATAGCAA
TAGACAGTTAGAAAGAAGTGGAAGATTTGGTGGTAATCCAGGTGGCTTTGGGAATCAGGGTGGATTTGGTAATAGTAGAG
GGGGTGGAGCTGGTTTGGGAAACAATCAAGGTAGTAATATGGGTGGTGGGATGAACTTTGGCGCATTCAGCATTAATCCA
GCCATGATGGCTGCAGCCCAGGCAGCGCTACAGAGCAGTTGGGGTATGATGGGCATGTTAGCCAGCCAGCAGAACCAGTC
AGGCCCATCGGGTAATAACCAAAGCCAAGGCAACATGCAGAGGGAGCCAAACCAGGCCTTTGGTTCTGGAAATAACTCTT
ATAGTGGTTCTAATTCTGGTGCAGCAATTGGTTGGGGATCAGCATCAAATGCAGGGTCGGGTAGTGGTTTTAATGGAGGC
TTTGGCTCAAGCATGGATTCTAAGTCTTCTGGCTGGGGAATGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 54 .14 RPM |
| SRP051959_skeletal_muscle | 28 .76 RPM |
| SRP051959_lymph_node | 58 .40 RPM |
| SRP051959_lung | 56 .89 RPM |
| SRP051959_liver | 32 .49 RPM |
| SRP051959_kidney | 43 .53 RPM |
| SRP051959_heart | 44 .92 RPM |
| SRP051959_colon | 33 .19 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000008531 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000120948 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000007456 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000041459 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009512 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000001894 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000000136 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000023126 | possible_ortholog | 1 retrogene | |
| Drosophila melanogaster | FBgn0025790 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_525 | 77.88 | 51.69 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2457 | 67.03 | 65.22 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000002381 retrocopies