Parental gene:

TARDBP, ENSPPYG00000001894

Aliases:TARDBP, TDP43
Description:TAR DNA-binding protein 43 [Source:RefSeq peptide;Acc:NP_001127597]
Organism:Orangutan (Pongo abelii)
Coordinates:1:219334584..219348201(-)


>ENSPPYG00000001894
ATGTCTGAATATATTCGGGTAACCGAAGATGAGAACGATGAGCCCATTGAAATACCATCGGAAGACGATGGGACGGTCCT
GCTGTCCACGGTTACAGCCCAGTTTCCAGGGGCGTGTGGGCTTCGCTACAGGAATCCAGTGTCTCAGTGTATGAGAGGTG
TCCGGCTGGTAGAAGGAATTCTGCATGCCCCCGATGCTGGCTGGGGAAATCTGGTGTATGTTGTCAACTATCCGAAAGAT
AACAAAAGAAAAATGGATGAGACAGATGCTTCATCAGCAGTGAAAGTGAAAAGAGCAGTCCAGAAAACATCCGATTTAAT
AGTGTTGGGTCTCCCATGGAAAACAACTGAACAGGACCTGAAAGAGTATTTTAGTACCTTTGGAGAAGTTCTTATGGTGC
AGGTCAAGAAAGATCTTAAGACTGGTCATTCAAAGGGGTTTGGCTTTGTTCGTTTTACGGAATATGAAACACAAGTGAAA
GTAATGTCACAGCGACATATGATAGATGGACGATGGTGTGACTGTAAACTTCCTAATTCTAAGCAAAGCCAAGATGAGCC
TTTGAGAAGCAGAAAAGTGTTTGTGGGGCGCTGTACAGAGGACATGACTGAGGATGAGCTGCGGGAGTTCTTCTCTCAGT
ACGGGGATGTGATGGATGTCTTCATCCCCAAGCCATTCAGGGCCTTTGCCTTTGTTACATTTGCAGATGATCAGATTGCG
CAGTCTCTTTGTGGAGAGGACTTGATCATTAAAGGAATCAGCGTTCATATATCCAATGCCGAACCTAAGCACAATAGCAA
TAGACAGTTAGAAAGAAGTGGAAGATTTGGTGGTAATCCAGGTGGCTTTGGGAATCAGGGTGGATTTGGTAATAGCAGAG
GGGGTGGAGCTGGTTTGGGAAACAATCAAGGTAGTAATATGGGTGGTGGGATGAACTTCGGTGCGTTCAGCATTAATCCA
GCGATGATGGCTGCCGCCCAGGCAGCACTACAGAGTAGTTGGGGTATGATGGGCATGTTAGCCAGCCAGCAGAACCAGTC
AGGCCCATCGGGTAATAACCAAAACCAAGGCAACATGCAGAGGGAGCCAAACCAGGCCTTCGGTTCTGGAAATAACTCTT
ATAGTGGTTCTAATTCTGGTGCAGCAATTGGTTGGGGATCAGCATCAAATGCAGGATCGGGCAGTGGTTTTAATGGAGGC
TTTGGCTCAAGCATGGATTCTAAGTCTTCTGGCTGGGGAATGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 142 .48 RPM
SRP007412_cerebellum 212 .80 RPM
SRP007412_heart 79 .53 RPM
SRP007412_kidney 134 .44 RPM
SRP007412_liver 101 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002381 ortholog_one2many 2 retrogenes
retro_cjac_2457, retro_cjac_525,
Dasypus novemcinctus ENSDNOG00000008531 ortholog_one2many 1 retrogene
retro_dnov_2262,
Homo sapiens ENSG00000120948 ortholog_one2one 2 retrogenes
retro_hsap_1209, retro_hsap_3637,
Macaca mulatta ENSMMUG00000007456 ortholog_one2one 1 retrogene
retro_mmul_1847,
Mus musculus ENSMUSG00000041459 ortholog_one2many 1 retrogene
retro_mmus_1958,
Nomascus leucogenys ENSNLEG00000009512 possible_ortholog 2 retrogenes
retro_nleu_201, retro_nleu_819,
Pan troglodytes ENSPTRG00000000136 ortholog_one2one 2 retrogenes
retro_ptro_2460, retro_ptro_828,
Sus scrofa ENSSSCG00000023126 possible_ortholog 1 retrogene
retro_sscr_652,
Tarsius syrichta ENSTSYG00000004077 possible_ortholog 1 retrogene
retro_tsyr_2004,
Drosophila melanogaster FBgn0025790 possible_ortholog 1 retrogene
retro_dmel_17,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1008 86.45 65.46
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Download FASTA sequences of all ENSPPYG00000001894 retrocopies