Parental gene:

ENSCJAG00000003168

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:145630671..145637330(-)


>ENSCJAG00000003168
ATGTCGTGCCAGTCGTCTATGGTTCTGGGGTACTGGGATATTCGCGGGCTGGCGCACGCCATCCGCCTGCTCCTGGAGTT
CACCGATACCTCCTACGAGGAGAAACGTTACACGTGCGGGGAAGCTCCTGACTATGATCGAAGCCAATGGCTGGATGTGA
AATTCAAGCTAAACTTGGACTTTCCTAATCTGCCCTACCTCCTGGATGGGAAGAACAAAATCACCCAGAGCAATGCCATC
TTGCGCTACATCGCCCGCAAGCACAACATGTGTGGTGAGACTGAAGAGGAAAAGATACGAGTGGACATCGTAGAGAACCA
AGTAATGGATTTCCGCATACAACTGATAAAGCTCTGTTACAGCTCTGACCATGAAAAACTGAAGCCTCAGTACTTGGAAC
AGCTACCTGGACAACTGAAACAATTCTCCATGTTTTTGGGGAAATTCTCATGGTTTGCAGGGGAAAAGCTCACCTATGTG
GACTTTCTCACCTATGATATCTTGGATCAGAACCGTATATTTGAGCCCAAGTGCCTGGATGAGTTCCCAAACCTGAAGGC
TTTCATGGGCCGTTTTGAGGCTTTGGAGAAAATCGCTGCCTACATACAGTCTGATAACTTCTTCAAGATGCCCATCAACA
ACAAGATGGCCCAATGGGGCAACAAGGCTATATGCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 1 .05 RPM
SRP051959_skeletal_muscle 4 .89 RPM
SRP051959_lymph_node 0 .80 RPM
SRP051959_lung 2 .18 RPM
SRP051959_liver 7 .21 RPM
SRP051959_kidney 3 .28 RPM
SRP051959_heart 1 .98 RPM
SRP051959_colon 1 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005380 ortholog_one2many 2 retrogenes
retro_chof_1850, retro_chof_1989,
Callithrix jacchus ENSCJAG00000000879 within_species_paralog 1 retrogene
retro_cjac_3321,
Callithrix jacchus ENSCJAG00000003123 within_species_paralog 7 retrogenes
retro_cjac_1299, retro_cjac_2226, retro_cjac_2463, retro_cjac_2498, retro_cjac_3004, retro_cjac_3084, retro_cjac_811,
Erinaceus europaeus ENSEEUG00000014211 ortholog_one2many 1 retrogene
retro_eeur_112,
Echinops telfairi ENSETEG00000005817 ortholog_many2many 2 retrogenes
retro_etel_1074, retro_etel_1910,
Homo sapiens ENSG00000134202 ortholog_one2many 1 retrogene
retro_hsap_2419,
Microcebus murinus ENSMICG00000005185 ortholog_one2many 1 retrogene
retro_mmur_1571,
Macaca mulatta ENSMMUG00000008029 ortholog_one2many 2 retrogenes
retro_mmul_610, retro_mmul_941,
Monodelphis domestica ENSMODG00000001899 ortholog_many2many 1 retrogene
retro_mdom_331,
Mus musculus ENSMUSG00000004032 ortholog_one2many 2 retrogenes
retro_mmus_491, retro_mmus_547,
Nomascus leucogenys ENSNLEG00000003302 ortholog_one2many 1 retrogene
retro_nleu_1895,
Pan troglodytes ENSPTRG00000001063 ortholog_one2many 2 retrogenes
retro_ptro_1393, retro_ptro_1709,
Rattus norvegicus ENSRNOG00000047034 ortholog_many2many 1 retrogene
retro_rnor_963,
Sus scrofa ENSSSCG00000006821 ortholog_one2many 2 retrogenes
retro_sscr_10, retro_sscr_855,
Tarsius syrichta ENSTSYG00000006736 ortholog_one2many 1 retrogene
retro_tsyr_145,
Tursiops truncatus ENSTTRG00000009682 ortholog_one2many 1 retrogene
retro_ttru_1828,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4 98.67 100.00
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Download FASTA sequences of all ENSCJAG00000003168 retrocopies