RetrogeneDB ID: | retro_ptro_1393 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 20:21620479..21620874(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GSTM3 | ||
Ensembl ID: | ENSPTRG00000001063 | ||
Aliases: | None | ||
Description: | Pan troglodytes glutathione S-transferase mu 3 (brain) (GSTM3), mRNA. [Source:RefSeq mRNA;Acc:NM_001246568] |
Percent Identity: | 55.07 % |
Parental protein coverage: | 59.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | GETEEEKIRVDIIENQVMDFRTQLIRLCYSSD-HEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFV |
GETEE.K...DI.E.Q......QL..L....D.HE..KP.Y.E..PGQLK.FS.FL.K.SWF.G.KLTF. | |
Retrocopy | GETEEGKVPGDIREDQMVEYHLQLKQLHHDPD<HETWKPPYSELQPGQLKHFSLFLRK-SWFPGGKLTFL |
Parental | DFLTYDILDQNRIFDPKCLDEFPNLKA-FMCRFEALEKIAAYLQSD-QFFKMPINNKMAQW-GNKPVC |
D.LT.D.LDQN..F..KCL.EFPNL...FM....ALE..AA..QS...FF.MP....MAQW.G.K.VC | |
Retrocopy | DILTCDVLDQNCMFELKCLYEFPNLRT<FMHHIAALEERAAPVQSA<LFFGMPVSSEMAQW<GTKSVC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .57 RPM | 16 .50 RPM |
SRP007412_cerebellum | 0 .43 RPM | 7 .21 RPM |
SRP007412_heart | 0 .00 RPM | 1 .78 RPM |
SRP007412_kidney | 0 .00 RPM | 87 .74 RPM |
SRP007412_liver | 0 .00 RPM | 0 .69 RPM |
SRP007412_testis | 0 .00 RPM | 1080 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_610 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005380 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000003168 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000014211 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005817 | 2 retrocopies | |
Homo sapiens | ENSG00000134202 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005185 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008029 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000001899 | 1 retrocopy | |
Mus musculus | ENSMUSG00000004032 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003302 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001061 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001063 | 2 retrocopies |
retro_ptro_1393 , retro_ptro_1709,
|
Rattus norvegicus | ENSRNOG00000047034 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000006821 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006736 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009682 | 1 retrocopy |