Parental gene: | ENSCJAG00000004992 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | X:63997723..64007191(+) |
>ENSCJAG00000004992
ATGCCCATGTGGTCTAAAGGGCTTGTAAGGCAACTGGAGCAGTTCAGAGTTCAACAGCAGGTTTCCAAGATGCCGCCCAA
AGGAAAAAGTGGTTCTGGAAAAGCGGGGAAAGGGGGAGCAGCCTCTGGGAGTGACAGTGCCGAAAAGAAGGCTCAAGGTC
CCAAAGGTGGTGGCAATGCAGTAAAGGTCAGACACATTCTATGTGAAAAACACAGCAAAATCATGGAAGCCATGGAAAAG
TTAAAGTCTGGGATGAGATTCAATGAAGTGGCTGCACAATATAGTGAAGATAAAGCCAGGCAAGGGGGTGACTTGGGTTG
GATGACCAGAGGGTCCATGGTGGGACCATTTCAAGAAGCAGCATTTGCCTTGCCTGTAAGTGGGATGGATAAGCCTGTGT
TTACAGACCCACCAGTTAAGACAAAATTTGGATATCATATTATTATGGTTGAAGGAAGAAAATAA
ATGCCCATGTGGTCTAAAGGGCTTGTAAGGCAACTGGAGCAGTTCAGAGTTCAACAGCAGGTTTCCAAGATGCCGCCCAA
AGGAAAAAGTGGTTCTGGAAAAGCGGGGAAAGGGGGAGCAGCCTCTGGGAGTGACAGTGCCGAAAAGAAGGCTCAAGGTC
CCAAAGGTGGTGGCAATGCAGTAAAGGTCAGACACATTCTATGTGAAAAACACAGCAAAATCATGGAAGCCATGGAAAAG
TTAAAGTCTGGGATGAGATTCAATGAAGTGGCTGCACAATATAGTGAAGATAAAGCCAGGCAAGGGGGTGACTTGGGTTG
GATGACCAGAGGGTCCATGGTGGGACCATTTCAAGAAGCAGCATTTGCCTTGCCTGTAAGTGGGATGGATAAGCCTGTGT
TTACAGACCCACCAGTTAAGACAAAATTTGGATATCATATTATTATGGTTGAAGGAAGAAAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 1 .83 RPM |
| SRP051959_skeletal_muscle | 1 .51 RPM |
| SRP051959_lymph_node | 1 .71 RPM |
| SRP051959_lung | 1 .61 RPM |
| SRP051959_liver | 2 .86 RPM |
| SRP051959_kidney | 3 .00 RPM |
| SRP051959_heart | 1 .84 RPM |
| SRP051959_colon | 1 .31 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005801 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000032230 | ortholog_many2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000011401 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000006985 | ortholog_one2many | 2 retrogenes | |
| Felis catus | ENSFCAG00000012036 | ortholog_one2many | 5 retrogenes | |
| Homo sapiens | ENSG00000102309 | possible_ortholog | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000016008 | possible_ortholog | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000018261 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000003611 | ortholog_one2many | 1 retrogene | |
| Microcebus murinus | ENSMICG00000001640 | ortholog_one2many | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000012073 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000005287 | ortholog_one2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000079480 | ortholog_one2many | 8 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000018119 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000008715 | ortholog_many2many | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000020460 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000050051 | ortholog_one2many | 6 retrogenes | |
| Sorex araneus | ENSSARG00000003732 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1218 | 56.43 | 87.01 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1587 | 93.75 | 83.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1631 | 95.74 | 90.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1720 | 83.02 | 67.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_1729 | 63.77 | 88.96 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_1746 | 95.28 | 82.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_1863 | 84.35 | 94.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_2670 | 86.47 | 85.06 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_2704 | 77.70 | 94.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cjac_2829 | 90.65 | 90.26 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000004992 retrocopies