RetrogeneDB ID: | retro_cfam_212 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 28:17935491..17935944(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000024653 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000032230 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.76 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KGGAASGSDSSDKKAQGPKGGGNTIKVRHILCEKHGKIMEAMEKLKSGMRFNEVATQYSEDKARQGGDLG |
KGGA.SGSDSSDKK.QGPKGGGNTIKV.HILCEKHGKIMEAMEKLKSGMRFNEVATQYSEDKARQGGDLG | |
Retrocopy | KGGATSGSDSSDKKVQGPKGGGNTIKVGHILCEKHGKIMEAMEKLKSGMRFNEVATQYSEDKARQGGDLG |
Parental | WMTRGSMVGPFQEAAFALPVSGPDEPVFTDPPIRTEFGYHIIMVEGRK |
WMTRGSMVGPFQEAAFALPVSGPD.PVFTDPPIRT.FGYHIIMVEGRK | |
Retrocopy | WMTRGSMVGPFQEAAFALPVSGPDKPVFTDPPIRTKFGYHIIMVEGRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 8 .06 RPM |
SRP017611_brain | 0 .00 RPM | 2 .14 RPM |
SRP017611_kidney | 0 .26 RPM | 12 .28 RPM |
SRP017611_liver | 0 .07 RPM | 4 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005801 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000032230 | 1 retrocopy |
retro_cfam_212 ,
|
Callithrix jacchus | ENSCJAG00000004992 | 10 retrocopies | |
Cavia porcellus | ENSCPOG00000011401 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000006985 | 2 retrocopies | |
Felis catus | ENSFCAG00000012036 | 5 retrocopies | |
Homo sapiens | ENSG00000102309 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000016008 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000018261 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003611 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001640 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000012073 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005287 | 3 retrocopies | |
Mus musculus | ENSMUSG00000079480 | 8 retrocopies | |
Nomascus leucogenys | ENSNLEG00000018119 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008715 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020460 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000050051 | 6 retrocopies | |
Sorex araneus | ENSSARG00000003732 | 2 retrocopies |