RetrogeneDB ID: | retro_rnor_1755 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 20:14415158..14415538(-) | ||
Located in intron of: | ENSRNOG00000001229 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pin4 | ||
Ensembl ID: | ENSRNOG00000050051 | ||
Aliases: | None | ||
Description: | protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Source:MGI Symbol;Acc:MGI:1916963] |
Percent Identity: | 86.92 % |
Parental protein coverage: | 97.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KGKSGSGKGGKGGAASGSDSADKKSQGPKGGGNAVKVRHILCEK-HGKIMEAMEKLKSGMRFSEVATQYS |
KGKS.SGKGGKGGAASGSD.ADKKS.GPKGGG.AVKVRHILCEK.HGKIMEAMEKLKSGMR.SEVATQ.S | |
Retrocopy | KGKSSSGKGGKGGAASGSDWADKKSRGPKGGGKAVKVRHILCEK>HGKIMEAMEKLKSGMRASEVATQNS |
Parental | EDKARQGGDLGWMTRGSMV-GPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK |
ED.ARQGGDLG.MTRGSMV.G.F......LPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK | |
Retrocopy | EDTARQGGDLG*MTRGSMV>GHFKKQP--LPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .13 RPM |
SRP017611_kidney | 0 .21 RPM | 10 .26 RPM |
SRP017611_liver | 0 .20 RPM | 7 .87 RPM |