Parental gene: | ENSCJAG00000005632 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 22:1135033..1137475(+) |
>ENSCJAG00000005632
ATGGCAGAGGTCGAGCAGAAGAAGAAGCGGACCTTCCGCAAGTTCACCTACCGCGGCGTGGACCTGGACCAGCTGCTGGA
CATGTCCTACGAGCATCAGATGCAGCTGTACAGTGCGTGCCAGCGGCGGCGGCAGAGCCGGGGCCTTCGGCGGAAGCAGC
ACTCAATGCTCAAGCGCCTGCGCAAGGCCAAGAAGGAGGCACCGCCCATGGAGAAGCCGGAAGTGGTGAATACGCACCTG
CGGGACATGATCATCCTGCCCGAGATGGTGGGCAGCATGGTGGGCGTCTACAACGGCAAGACTTTCACACAGGTGGAGAT
CAAGCCCGAGATGATCGGCCACTACCTGGGCGAGTTCTCCATCACCTACAAGCCCGTGAAGCACGGCCGGCCGGGCATCG
GGGCCACTCACTCGTCCCGCTTCATCCCCCTCAAGTAG
ATGGCAGAGGTCGAGCAGAAGAAGAAGCGGACCTTCCGCAAGTTCACCTACCGCGGCGTGGACCTGGACCAGCTGCTGGA
CATGTCCTACGAGCATCAGATGCAGCTGTACAGTGCGTGCCAGCGGCGGCGGCAGAGCCGGGGCCTTCGGCGGAAGCAGC
ACTCAATGCTCAAGCGCCTGCGCAAGGCCAAGAAGGAGGCACCGCCCATGGAGAAGCCGGAAGTGGTGAATACGCACCTG
CGGGACATGATCATCCTGCCCGAGATGGTGGGCAGCATGGTGGGCGTCTACAACGGCAAGACTTTCACACAGGTGGAGAT
CAAGCCCGAGATGATCGGCCACTACCTGGGCGAGTTCTCCATCACCTACAAGCCCGTGAAGCACGGCCGGCCGGGCATCG
GGGCCACTCACTCGTCCCGCTTCATCCCCCTCAAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 21 .70 RPM |
| SRP051959_skeletal_muscle | 20 .46 RPM |
| SRP051959_lymph_node | 36 .07 RPM |
| SRP051959_lung | 17 .21 RPM |
| SRP051959_liver | 24 .09 RPM |
| SRP051959_kidney | 14 .82 RPM |
| SRP051959_heart | 13 .72 RPM |
| SRP051959_colon | 19 .21 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000019718 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000003968 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000000706 | possible_ortholog | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000008645 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000010769 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000115268 | ortholog_one2many | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002818 | possible_ortholog | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000003050 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000005119 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000063457 | ortholog_one2many | 8 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000001651 | possible_ortholog | 8 retrogenes | |
| Otolemur garnettii | ENSOGAG00000015776 | possible_ortholog | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000009317 | possible_ortholog | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000010200 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000003168 | ortholog_one2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000024603 | possible_ortholog | 8 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000013424 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000023248 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000006423 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_48 | 73.33 | 91.03 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_86 | 71.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_143 | 75.00 | 96.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_151 | 73.61 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_756 | 69.86 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_1517 | 75.17 | 99.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_1607 | 65.89 | 88.28 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_1672 | 80.14 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_1714 | 81.38 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cjac_2069 | 80.95 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_cjac_2236 | 70.83 | 98.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_cjac_2596 | 80.14 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_cjac_2656 | 73.88 | 91.03 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000005632 retrocopies