Parental gene:

ENSCJAG00000005727

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:21:43292906..43300654(-)


>ENSCJAG00000005727
ATGGGGCTTTTCTTCAGGATAAATCTTCAGACAAAAAAGTGCAAACAAAAGGGAAAAGGGGAGCAAAGGGAAAACAGGCT
GAAGTGGCTAAAGAAACTAAAGAAGATTTACCTGCAGAAAACGGGGAAACGAAAATTGAGGAGAGTCCAGCCTCTGATGA
AGCAGGAGAGAAAGAAGCCAAGTCCGATTAATACCATACCATGTCTTATCAGTGGTCCCTGTCTCCCTTCTTGTACAATC
CAGAGGAATATTTTTATCAACTATTTTGTAAATGCAAGTTTTTTAGTAGCTCTAGAAACATTTTTAAGAAGGAGGGAATC
CCACCTCATCCCATTTTTTAAGTGTAAATGCTTTTTTTTAAGAGGTGAAATCATTTTCTGGTTGTTTATTTTTCGGTACA
GCCAGAAAATAGTGTGGGATATTGAATTATGGGAGGCTTTGACTGTCTCGGGTGTCAGCTTAACATTCCATAGATGGGGA
GTTAGTTTTTATATCCTATAA

Library Parental gene expression (RPM)
SRP051959_spleen 39 .47 RPM
SRP051959_skeletal_muscle 6 .46 RPM
SRP051959_lymph_node 73 .12 RPM
SRP051959_lung 40 .93 RPM
SRP051959_liver 33 .12 RPM
SRP051959_kidney 49 .03 RPM
SRP051959_heart 18 .86 RPM
SRP051959_colon 38 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Gorilla gorilla ENSGGOG00000013672 ortholog_one2many 6 retrogenes
retro_ggor_107, retro_ggor_145, retro_ggor_16, retro_ggor_2248, retro_ggor_48, retro_ggor_49,
Otolemur garnettii ENSOGAG00000033084 ortholog_one2one 3 retrogenes
retro_ogar_1799, retro_ogar_2793, retro_ogar_3104,
Tarsius syrichta ENSTSYG00000005812 ortholog_one2one 15 retrogenes
retro_tsyr_1029, retro_tsyr_1109, retro_tsyr_1203, retro_tsyr_1209, retro_tsyr_1243, retro_tsyr_1318, retro_tsyr_1904, retro_tsyr_1956, retro_tsyr_310, retro_tsyr_399, retro_tsyr_652, retro_tsyr_664, retro_tsyr_680, retro_tsyr_728, retro_tsyr_913,
Tursiops truncatus ENSTTRG00000015372 ortholog_one2one 12 retrogenes
retro_ttru_1034, retro_ttru_129, retro_ttru_1511, retro_ttru_1682, retro_ttru_1714, retro_ttru_200, retro_ttru_337, retro_ttru_373, retro_ttru_558, retro_ttru_61, retro_ttru_680, retro_ttru_980,
Vicugna pacos ENSVPAG00000000013 ortholog_one2one 7 retrogenes
retro_vpac_146, retro_vpac_216, retro_vpac_248, retro_vpac_371, retro_vpac_499, retro_vpac_557, retro_vpac_66,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1105 71.70 50.51
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2. retro_cjac_1412 51.06 90.91
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3. retro_cjac_2018 67.31 100.00
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4. retro_cjac_4230 60.71 56.57
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Download FASTA sequences of all ENSCJAG00000005727 retrocopies