RetrogeneDB ID: | retro_cjac_1105 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 13:60854838..60854993(+) | ||
Located in intron of: | ENSCJAG00000020556 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000005727 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.7 % |
Parental protein coverage: | 50.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPKRKVSSAEGAAKEEPKRRS-ARLSAKP-PAKVEAK-PKKAAAKDKSSDKKV |
MPKRKVSSA.GA.KE.PK.R..A.LSA.P.PA.VE.K.PKKAA.K.KSSD.KV | |
Retrocopy | MPKRKVSSAKGAMKEKPKSRI>AQLSANPAPATVETK>PKKAAGKGKSSDIKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 38 .63 RPM |
SRP051959_heart | 0 .00 RPM | 18 .86 RPM |
SRP051959_kidney | 0 .04 RPM | 49 .03 RPM |
SRP051959_liver | 0 .02 RPM | 33 .12 RPM |
SRP051959_lung | 0 .11 RPM | 40 .93 RPM |
SRP051959_lymph_node | 0 .00 RPM | 73 .12 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 6 .46 RPM |
SRP051959_spleen | 0 .06 RPM | 39 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005727 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000013672 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000033084 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000005812 | 15 retrocopies | |
Tursiops truncatus | ENSTTRG00000015372 | 12 retrocopies | |
Vicugna pacos | ENSVPAG00000000013 | 7 retrocopies |