Parental gene:

ODC1, ENSCJAG00000006576

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:98131850..98140064(+)


>ENSCJAG00000006576
ATGAACAACTTTGGCAATGAAGAGTTTGACTGCCACTTCCTTGATGAAGGTTTTACTGCCAAGGACATTCTGGACCAAAA
AATTAATGAAGTTTCTTCTTCTGATGATAAGGATGCCTTCTATGTCGCAGACCTGGGAGACATTCTAAAGAAACATCTAA
GGTGGTTAAAAGCCCTCCCTCGTGTGATGCCCTTTTATGCAGTCAAATGTAATGATAGCAGAGCCATCGTGAATGCCCTT
GCTGCTATTGGGACAGGGTTTGACTGTGCTAGCAAGACCGAAATACAGTTGGTGCAGAGTCTGGGGGTGCCTCCGGAGAG
GATTATCTATGCAAACCCTTGTAAACAAGTATCTCAAATTAAGTACGCTGCTAATAATGGAGTCCAGATGATGACTTTTG
ATAGTGAAGTTGAGTTGATGAAAGTTGCCAGGGCACATCCAAAAGCAAAGTTGGTTTTGCGGATTGCCACTGATGATTCC
AAAGCAATCTGTCGTCTCAGCGTTAAATTCGGTGCCACACTCAAAACCAGCAGGCTCCTTTTGGAACGGGCGAAAGAGCT
AAATATCGATGTCATTGGTGTCAGCTTCCACGTAGGAAGCGGCTGTACCGACCCCGAGACCTTTGTGCAGGCAATCACTG
ATGCCCGCTGTGTTTTTGACATGGGGGCTGAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGCGGTGGCTTTCCTGGA
TCTGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGCGTAATCAACCCAGCGTTGGACAAATATTTTCCGTCTGACTC
TGAAGTGAGAATCATAGCTGAGCCCGGCAGATACTATGTTGCATCAGCCTTCACACTTGCAGTTAATATCATTGCCAAGA
AAATTGTATTAAAGGAACAGACTGGCTCTGATGATGAAGATGAGTCGAGTGAGCAGACATTTATGTATTACGTGAACGAC
GGTGTCTATGGATCATTTAACTGCATACTGTACGATCATGCACATGTCAAACCCCTTCTGCAAAAGAGACCTAAACCAGA
CGAGAAGTATTACTCATCCAGCATATGGGGACCAACGTGTGATGGCCTCGATCGGATTGTTGAGCGCTGTGACCTGCCTG
AAATGCACGTGGGTGACTGGATGCTCTTTGAAAACATGGGCGCGTACACTGTTGCTGCTGCGTCTACTTTCAACGGCTTC
CAGAGGCCGACAATCTACTATGTAATGTCGGGGCCTGCATGGCAACTCATGCAGCAAATCCAGAACCCTGACTTCCCACC
CGAAGTAGAGGAACAGGACGTCAGCACCCTGCCTGTTTCTTGTGCTTGGGAGAGTGGGATGGAACGCCACCCAGCAGCTT
GTGCTTCAGCTAGTATTAATGTGTAG

Library Parental gene expression (RPM)
SRP051959_spleen 23 .26 RPM
SRP051959_skeletal_muscle 36 .84 RPM
SRP051959_lymph_node 26 .80 RPM
SRP051959_lung 42 .85 RPM
SRP051959_liver 31 .30 RPM
SRP051959_kidney 33 .52 RPM
SRP051959_heart 36 .13 RPM
SRP051959_colon 53 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011415 possible_ortholog 1 retrogene
retro_amel_414,
Bos taurus ENSBTAG00000004256 possible_ortholog 1 retrogene
retro_btau_552,
Dasypus novemcinctus ENSDNOG00000018474 ortholog_one2many 31 retrogenes
retro_dnov_1032, retro_dnov_1128, retro_dnov_1129, retro_dnov_1137, retro_dnov_1212, retro_dnov_1235, retro_dnov_1418, retro_dnov_1434, retro_dnov_1493, retro_dnov_1594, retro_dnov_1595, retro_dnov_1677, retro_dnov_1778, retro_dnov_1810, retro_dnov_1813, retro_dnov_2016, retro_dnov_2027, retro_dnov_2108, retro_dnov_2147, retro_dnov_2180, retro_dnov_2212, retro_dnov_2461, retro_dnov_2551, retro_dnov_2564, retro_dnov_392, retro_dnov_740, retro_dnov_766, retro_dnov_781, retro_dnov_923, retro_dnov_943, retro_dnov_958,
Myotis lucifugus ENSMLUG00000010423 possible_ortholog 1 retrogene
retro_mluc_281,
Macaca mulatta ENSMMUG00000020441 ortholog_one2many 2 retrogenes
retro_mmul_157, retro_mmul_1645,
Monodelphis domestica ENSMODG00000014779 ortholog_one2many 1 retrogene
retro_mdom_262,
Nomascus leucogenys ENSNLEG00000013820 ortholog_one2one 1 retrogene
retro_nleu_1119,
Pongo abelii ENSPPYG00000012654 ortholog_one2one 1 retrogene
retro_pabe_3090,
Ictidomys tridecemlineatus ENSSTOG00000000386 possible_ortholog 2 retrogenes
retro_itri_1751, retro_itri_801,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3170 58.30 52.71
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2. retro_cjac_3857 92.66 62.04
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Download FASTA sequences of all ENSCJAG00000006576 retrocopies