Parental gene:

ENSSTOG00000000386

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393342.1:6581943..6586780(-)


>ENSSTOG00000000386
ATGAACAACTTTAGTAATGAAGAGTTTGACTGCCACTTCCTTGATGAAGGCTTTACTGCCAAGGACATTTTGGACCAAAA
AATTAATGAAGTGTCTTCTTCTGACGATAAGGATGCCTTTTATGTCGCAGACCTTGGAGACATTCTAAAGAAACATCTAA
GATGGTTAAAAGCTCTTCCTCGTGTTACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAGCCATAGTGAAGACCTTA
GCTGCCATTGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTGGTGCAGAGTCTCGGAGTGCCTCCAGAGAG
GATTATCTATGCAAATCCTTGTAAGCAGGTGTCTCAAATTAAATATGCTGCCAGTATTGGAGTCCAAATGATGACTTTTG
ACAGTGAAGTTGAGTTGATGAAGGTTGCCAGAGCACATCCAAAGGCAAAGTTGGTTTTGCGGATTGCTACTGATGATTCC
AAAGCAGTCTGTCGTCTCAGTGTTAAATTCGGTGCCACACTCAAAACCAGCAGACTTCTTTTGGAACGAGCTAAAGAATT
AAATATTGATGTCATTGGTGTCAGCTTTCACGTGGGGAGTGGCTGCACTGATCCTGAGACCTTCGTGCAGGCCATCTCTG
ACGCCCGCTGTGTCTTTGACATGGGAGCTGAGGCTGGTTTCAGCATGCGTCTACTGGATATTGGTGGTGGCTTCCCTGGA
TCTGAGGATGTGAAGCTTAAGTTTGAGGAGATCACCAGTGTGATCAATCCAGCACTGGACAAATACTTTCCATCAGACTC
TGGAGTGAGAATCATAGCTGAACCAGGAAGATATTATGTTGCTTCAGCTTTCACACTTGCAGTTAATATCATTGCCAAAA
AACTCGTATTAAAGGAACAGACAGGCTCTGATGATGAAGATGAGGCAAGTGAACAGACCTTTATGTATTATGTGAATGAC
GGAGTATACGGATCATTTAATTGCATCCTTTATGATCATGCACATGTAAAGCCCCTGCTGCAGAAGAGACCTAAACCAGA
TGAGAAGTATTATTCATCCAGCATATGGGGACCGACCTGTGATGGCCTTGATCGGATTGTCGAGCGCTGTGACCTTCCCG
AAATGCATGTGGGTGATTGGATGCTTTTTGAAAACATGGGTGCATACACTGTTGCTGCTGCTTCTACTTTCAATGGATTC
CAGAGGCCAACTATCTATTATGTGATGTCAGGACCAACATGGCAGTGCATGCAGCAAATCCAGAACCATGGCTTCCCACC
CGAAGTGGAGGAGCAGGACGTTGGCACTCTGCCCGTGTCTTGTGCTCAGGAAAGCAGCATGAAACGTCACCCGGCAGCCT
GCGCCTCCACTAGTATCAACGTGTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011415 possible_ortholog 1 retrogene
retro_amel_414,
Bos taurus ENSBTAG00000004256 possible_ortholog 1 retrogene
retro_btau_552,
Choloepus hoffmanni ENSCHOG00000010898 possible_ortholog 2 retrogenes
retro_chof_1618, retro_chof_2111,
Callithrix jacchus ENSCJAG00000006576 possible_ortholog 2 retrogenes
retro_cjac_3170, retro_cjac_3857,
Dasypus novemcinctus ENSDNOG00000018474 possible_ortholog 31 retrogenes
retro_dnov_1032, retro_dnov_1128, retro_dnov_1129, retro_dnov_1137, retro_dnov_1212, retro_dnov_1235, retro_dnov_1418, retro_dnov_1434, retro_dnov_1493, retro_dnov_1594, retro_dnov_1595, retro_dnov_1677, retro_dnov_1778, retro_dnov_1810, retro_dnov_1813, retro_dnov_2016, retro_dnov_2027, retro_dnov_2108, retro_dnov_2147, retro_dnov_2180, retro_dnov_2212, retro_dnov_2461, retro_dnov_2551, retro_dnov_2564, retro_dnov_392, retro_dnov_740, retro_dnov_766, retro_dnov_781, retro_dnov_923, retro_dnov_943, retro_dnov_958,
Equus caballus ENSECAG00000022690 possible_ortholog 2 retrogenes
retro_ecab_1002, retro_ecab_957,
Loxodonta africana ENSLAFG00000005330 possible_ortholog 2 retrogenes
retro_lafr_218, retro_lafr_850,
Myotis lucifugus ENSMLUG00000010423 possible_ortholog 1 retrogene
retro_mluc_281,
Macaca mulatta ENSMMUG00000020441 possible_ortholog 2 retrogenes
retro_mmul_157, retro_mmul_1645,
Monodelphis domestica ENSMODG00000014779 ortholog_many2many 1 retrogene
retro_mdom_262,
Mustela putorius furo ENSMPUG00000013321 possible_ortholog 1 retrogene
retro_mputfur_1272,
Mus musculus ENSMUSG00000011179 ortholog_one2one 12 retrogenes
retro_mmus_2588, retro_mmus_2744, retro_mmus_2745, retro_mmus_2746, retro_mmus_2747, retro_mmus_2834, retro_mmus_2922, retro_mmus_3237, retro_mmus_3677, retro_mmus_503, retro_mmus_912, retro_mmus_984,
Nomascus leucogenys ENSNLEG00000013820 possible_ortholog 1 retrogene
retro_nleu_1119,
Pongo abelii ENSPPYG00000012654 possible_ortholog 1 retrogene
retro_pabe_3090,
Tursiops truncatus ENSTTRG00000004611 possible_ortholog 3 retrogenes
retro_ttru_1940, retro_ttru_731, retro_ttru_843,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_801 73.93 54.66
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2. retro_itri_1751 93.91 67.46
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Download FASTA sequences of all ENSSTOG00000000386 retrocopies