Parental gene:

ODC1, ENSPPYG00000012654

Aliases:None
Description:ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:8109]
Organism:Orangutan (Pongo abelii)
Coordinates:2a:102241519..102250071(+)


>ENSPPYG00000012654
ATGAATAACTTTGGTAATGAAGAGTTTGACTGCCACTTCCTCGATGAAGGTTTTACTGCCAAGGACATTCTGGACCAAAA
AATTAATGAAGTTTCTTCTTCTGATGATAAGGATGCCTTCTATGTGGCAGACCTGGGAGACATTTTAAAGAAACATCTGA
GGTGGTTGAAAGCTGTCCCTCGTGTCACCCCCTTTTATGCAGTCAAATGTAATGATAGCAAAGCCATTGTGAAGACGCTT
GCTGCTGTCGGGACGGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTGGTGCAGAGTCTGGGGGTGCCTCCAGAGAG
GATTATCTATGCAAATCCTTGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTTG
ATAGTGAAGTTGAGTTGATGAAAGTTGCCAGAGCACATCCAAAAGCAAAGTTGGTTTTGCGGATTGCCACTGATGATTCC
AAAGCAGTCTGTCGTCTCAGTGTTAAATTCGGTGCCACGCTCAGAACCAGCAGGCTCCTTTTGGAACGGGCGAAAGAGCT
AAATATCGATGTTGTTGGTGTGAGCTTCCATGTAGGAAGCGGCTGTACCGATCCTGAGACCTTCGTGCAGGCAATCTCTG
ATGCCCGCTGTGTTTTTGACATGGGGGCTGAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGCGGTGGCTTTCCTGGA
TCTGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGCGTAATCAACCCAGCATTGGACAAATATTTTCCATCAGACTC
TGGCGTGAGAATCATAGCTGAGCCCGGCAGATACTATGTTGCATCAGCTTTCACACTTGCAGTTAATATCATCGCCAAGA
AGATGGTATTAAAGGAGCAGACCGGCTCCGATGATGAAGACGAGTCGAGTGAACAGACCTTTATGTATTATGTGAATGAT
GGCGTCTATGGATCATTTAATTGCATACTGTATGATCACGCACATGTAAAGCCCCTTCTGCAAAAGAGACCTAAACCAGA
TGAGAAGTATTATTCATCCAGCATATGGGGACCAACATGTGATGGCCTCGATCGGATTGTTGAGCGCTGTGACCTGCCCG
AAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACACTGTTGCTGCTGCCTCTACGTTCAATGGCTTC
CAGAGGCCGACGATCTACTATGTGATGTCAGGGCCTGCGTGGCAACTCATGCAGCAATTCCAGAACCCCGACTTCCCACC
CGAAGTAGAGGAACAGGATGCCAGCACCCTGCCTGTGTCTTGTGCCCGGGAGAGTGGGATGAAACGCCACAGAGCAGCCT
GTGCTTCAGCTAGTATTAATGTGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 29 .75 RPM
SRP007412_cerebellum 21 .65 RPM
SRP007412_heart 37 .75 RPM
SRP007412_kidney 188 .87 RPM
SRP007412_liver 149 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011415 possible_ortholog 1 retrogene
retro_amel_414,
Bos taurus ENSBTAG00000004256 possible_ortholog 1 retrogene
retro_btau_552,
Callithrix jacchus ENSCJAG00000006576 ortholog_one2one 2 retrogenes
retro_cjac_3170, retro_cjac_3857,
Dasypus novemcinctus ENSDNOG00000018474 ortholog_one2many 31 retrogenes
retro_dnov_1032, retro_dnov_1128, retro_dnov_1129, retro_dnov_1137, retro_dnov_1212, retro_dnov_1235, retro_dnov_1418, retro_dnov_1434, retro_dnov_1493, retro_dnov_1594, retro_dnov_1595, retro_dnov_1677, retro_dnov_1778, retro_dnov_1810, retro_dnov_1813, retro_dnov_2016, retro_dnov_2027, retro_dnov_2108, retro_dnov_2147, retro_dnov_2180, retro_dnov_2212, retro_dnov_2461, retro_dnov_2551, retro_dnov_2564, retro_dnov_392, retro_dnov_740, retro_dnov_766, retro_dnov_781, retro_dnov_923, retro_dnov_943, retro_dnov_958,
Myotis lucifugus ENSMLUG00000010423 possible_ortholog 1 retrogene
retro_mluc_281,
Macaca mulatta ENSMMUG00000020441 ortholog_one2many 2 retrogenes
retro_mmul_157, retro_mmul_1645,
Monodelphis domestica ENSMODG00000014779 ortholog_one2many 1 retrogene
retro_mdom_262,
Nomascus leucogenys ENSNLEG00000013820 ortholog_one2one 1 retrogene
retro_nleu_1119,
Ictidomys tridecemlineatus ENSSTOG00000000386 possible_ortholog 2 retrogenes
retro_itri_1751, retro_itri_801,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3090 73.33 58.13
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Download FASTA sequences of all ENSPPYG00000012654 retrocopies