Parental gene: | CDK1, ENSCJAG00000007001 |
| Aliases: | None |
| Description: | cyclin-dependent kinase 1 [Source:HGNC Symbol;Acc:1722] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:63589984..63608158(-) |
>ENSCJAG00000007001
ATGGAAGATTATACTAAAATAGAGAAAATTGGAGAAGGTGAGTGGCTTTACTACTACACTCATAATCACAAAACTACAGG
TCAAGTGGTCGCCATGAAAAAAATCAGACTAGAAAGTGAAGAGGAAGGGGTTCCTAGTACTGCAATTCGGGAAATTTCTC
TATTAAAAGAACTTCGTCATCCAAATATAGTCAGTCTTCAGGATGTGCTTATGCAGGATTCCAGGTTATATCTCATCTTT
GAATTTCTTTCCATGGATCTGAAGAAATACTTAGATTCTATCCCTCCTGGCCAATACATGGATTCTTCACTTGTTAAGGT
AAAAGCTTACAGTTATTTATACCAAATCCTACAGGGGATTGTGTTTTGTCACTCTAGAAGAGTTCTTCACAGAGACTTAA
AACCTCAAAATCTCTTGATTGATGACAAAGGAACAATTAAACTGGCTGATTTTGGCCTTGCCAGAGCTTTTGGAATACCT
ATTAGAGTATATACACATGAGGTAGTGACACTGTGGTACAGATCACCAGAAGTATTGCTGGGGTCAGCTCGTTACTCGAC
TCCAGTTGACATCTGGAGTATAGGCACCATATTTGCTGAACTAGCAACTAAGAAACCACTTTTCCATGGGGATTCAGAAA
TTGATCAACTCTTCAGGATTTTCAGAGCTTTGGGCACTCCTAATAATGAAGTCTGGCCAGAAGTGGAATCCTTACAGGAC
TATAAGAATACATTTCCCAAGTGGAAACCAGGAAGCCTAGCATCCCATGTCAAAAACTTGGATGAAAATGGCTTGGATTT
GCTCTCAAAAATGTTAATCTACGATCCAGCCAAAAGAATTTCTGGCAAAATGGCACTGAATCATCCATATTTTCATGATT
TGGACAATCAGATTAAGAAGATATAG
ATGGAAGATTATACTAAAATAGAGAAAATTGGAGAAGGTGAGTGGCTTTACTACTACACTCATAATCACAAAACTACAGG
TCAAGTGGTCGCCATGAAAAAAATCAGACTAGAAAGTGAAGAGGAAGGGGTTCCTAGTACTGCAATTCGGGAAATTTCTC
TATTAAAAGAACTTCGTCATCCAAATATAGTCAGTCTTCAGGATGTGCTTATGCAGGATTCCAGGTTATATCTCATCTTT
GAATTTCTTTCCATGGATCTGAAGAAATACTTAGATTCTATCCCTCCTGGCCAATACATGGATTCTTCACTTGTTAAGGT
AAAAGCTTACAGTTATTTATACCAAATCCTACAGGGGATTGTGTTTTGTCACTCTAGAAGAGTTCTTCACAGAGACTTAA
AACCTCAAAATCTCTTGATTGATGACAAAGGAACAATTAAACTGGCTGATTTTGGCCTTGCCAGAGCTTTTGGAATACCT
ATTAGAGTATATACACATGAGGTAGTGACACTGTGGTACAGATCACCAGAAGTATTGCTGGGGTCAGCTCGTTACTCGAC
TCCAGTTGACATCTGGAGTATAGGCACCATATTTGCTGAACTAGCAACTAAGAAACCACTTTTCCATGGGGATTCAGAAA
TTGATCAACTCTTCAGGATTTTCAGAGCTTTGGGCACTCCTAATAATGAAGTCTGGCCAGAAGTGGAATCCTTACAGGAC
TATAAGAATACATTTCCCAAGTGGAAACCAGGAAGCCTAGCATCCCATGTCAAAAACTTGGATGAAAATGGCTTGGATTT
GCTCTCAAAAATGTTAATCTACGATCCAGCCAAAAGAATTTCTGGCAAAATGGCACTGAATCATCCATATTTTCATGATT
TGGACAATCAGATTAAGAAGATATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 3 .42 RPM |
| SRP051959_skeletal_muscle | 0 .00 RPM |
| SRP051959_lymph_node | 3 .45 RPM |
| SRP051959_lung | 1 .43 RPM |
| SRP051959_liver | 0 .54 RPM |
| SRP051959_kidney | 0 .98 RPM |
| SRP051959_heart | 0 .12 RPM |
| SRP051959_colon | 9 .67 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000006697 | within_species_paralog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000012261 | other_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014175 | other_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000020258 | other_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000005402 | ortholog_one2one | 3 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000018590 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000009716 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000014972 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000005793 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017091 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000000632 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000017549 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000001085 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_671 | 91.85 | 89.37 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1846 | 84.75 | 78.07 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000007001 retrocopies