Parental gene:

CDK1, ENSCPOG00000005402

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_15:11424222..11437113(+)


>ENSCPOG00000005402
ATGGAAGACTACACTAAAATAGAGAAAATTGGAGAAGGTACTTACGGAGTTGTATATAAGGGTAGACACAAAACTACAGG
TCAAGTGGTAGCCATGAAGAAAATCAGACTAGAAAGTGAAGAGGAAGGGGTTCCTAGTACTGCAATTCGGGAAATTTCTC
TATTAAAAGAACTTCGTCATCCAAATATAGTCAGTCTTCAAGATGTGCTTATGCAAGATTCCAGGTTATATCTCATTTTT
GAATTCCTTTCTATGGATCTGAAGAAATACTTGGATTCTATTCCTGCTGGGCAGTTCATGGATTCATCACTTGTTAAGGC
CTCTTATGCAAATGAAATTTTATATATTCATATGCATAAACTAGCCCTCTTTGATTTGTGTTTACTGTTAATAACTTTTC
TAATATATGTAAAAAATGCCTTGTCTGACTTGGATTTTCTTCTGCTTTTGATATTTGGAATGCAAGAAAAGAACAGTTCT
TATGAAGTAGTAACACTCTGGTATAGATCTCCAGAAGTATTGCTGGGGTCAGCTCGGTACTCTACTCCAGTAGACATTTG
GAGTATAGGCACAATCTTTGCAGAATTGGCAACTAAGAAACCACTTTTCCATGGGGATTCAGAAATTGATCAACTGTTCA
GGATTTTCAGAGCTTTAGGCACTCCCAACAATGAAGTATGGCCAGAAGTGGAATCTTTACAGGACTATAAGAATACATTT
CCCAAATGGAAACCAGGAAGCCTAGCATCCCATGTCAAAAACTTGGATGAAAATGGCTTGGATTTACTCTCGAAAATGTT
AGTCTATGATCCTGCTAAACGAATTTCTGGCAAAATGGCACTGAATCATCCGTATTTTAATGATTTGGACAATCAGATTA
AGAAGATGTAG

Library Parental gene expression (RPM)
SRP017611_brain 0 .35 RPM
SRP017611_kidney 1 .36 RPM
SRP017611_liver 0 .96 RPM
SRP040447_lung 4 .16 RPM
SRP040447_skeletal_muscle 0 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007001 ortholog_one2one 2 retrogenes
retro_cjac_1846, retro_cjac_671,
Cavia porcellus ENSCPOG00000002670 within_species_paralog 1 retrogene
retro_cpor_457,
Dasypus novemcinctus ENSDNOG00000018590 ortholog_one2one 1 retrogene
retro_dnov_265,
Equus caballus ENSECAG00000009716 ortholog_one2one 1 retrogene
retro_ecab_637,
Felis catus ENSFCAG00000014972 ortholog_one2one 1 retrogene
retro_fcat_329,
Microcebus murinus ENSMICG00000005793 ortholog_one2many 1 retrogene
retro_mmur_43,
Monodelphis domestica ENSMODG00000017091 ortholog_one2many 1 retrogene
retro_mdom_702,
Rattus norvegicus ENSRNOG00000000632 ortholog_one2one 1 retrogene
retro_rnor_1638,
Tupaia belangeri ENSTBEG00000017549 ortholog_one2one 3 retrogenes
retro_tbel_3309, retro_tbel_807, retro_tbel_812,
Tursiops truncatus ENSTTRG00000001085 ortholog_one2one 2 retrogenes
retro_ttru_1619, retro_ttru_1634,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_200 83.56 100.00
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2. retro_cpor_1414 82.82 55.07
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3. retro_cpor_1422 75.00 51.35
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Download FASTA sequences of all ENSCPOG00000005402 retrocopies