RetrogeneDB ID: | retro_cpor_200 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_10:16573238..16574129(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK1 | ||
Ensembl ID: | ENSCPOG00000005402 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVL |
MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDV. | |
Retrocopy | MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVI |
Parental | MQDSRLYLIFEFLSMDLKKYLDSIPAGQFMDSSLVKASYANEILY--IHMHKLALFDLCLLLITFLIYVK |
MQDSRLYLIFEFLSMDLKKYLDSIPAG.FMDS.LVK.SY...IL......H........L.....LI..K | |
Retrocopy | MQDSRLYLIFEFLSMDLKKYLDSIPAG*FMDSPLVK-SYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDK |
Parental | NALSDLDFLLLLIFGMQEKNSSYEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSE |
......DF.L...FG........EVVTLWYRSPEVL.GSA.YSTPVDIWSIGTIFAELATKKPLFHGDSE | |
Retrocopy | GTVKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLMGSAQYSTPVDIWSIGTIFAELATKKPLFHGDSE |
Parental | IDQLFRIFRALGTPNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDENGLDLLSKMLVYDPAKRISGK |
IDQLFRIFRALGTPNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDENGLDLLSKML.YDPAKRISGK | |
Retrocopy | IDQLFRIFRALGTPNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDENGLDLLSKMLAYDPAKRISGK |
Parental | MALNHPYFNDLDNQIKKM |
MALNHPYFNDLDNQIKKM | |
Retrocopy | MALNHPYFNDLDNQIKKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 0 .35 RPM |
SRP017611_kidney | 0 .21 RPM | 1 .36 RPM |
SRP017611_liver | 0 .44 RPM | 0 .96 RPM |
SRP040447_lung | 1 .16 RPM | 4 .16 RPM |
SRP040447_skeletal_muscle | 0 .16 RPM | 0 .30 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007001 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000002670 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005402 | 3 retrocopies |
retro_cpor_1414, retro_cpor_1422, retro_cpor_200 ,
|
Dasypus novemcinctus | ENSDNOG00000018590 | 1 retrocopy | |
Equus caballus | ENSECAG00000009716 | 1 retrocopy | |
Felis catus | ENSFCAG00000014972 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005793 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017091 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000632 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017549 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001085 | 2 retrocopies |