Parental gene:

PSMC6, ENSCJAG00000007126

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:77280184..77303259(+)


>ENSCJAG00000007126
ATGGCCATTCCCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGACCCTAGAGATAAGGCGCTTCAGGACTACCG
CAAGAAGCTGCTTGAGCACAAGGAGATCGACGGCCGTCTTAAGGAGTTAAGGGAACAATTAAAAGAACTTACCAAGCAGT
ATGAAAAGTCTGAAAATGATCTGAAGGCCCTACAAAGTGTTGGGCAGATTGTGGGTGAAGTGCTTAAACAGTTAACCGAA
GAAAAATTCATCGTTAAAGCAACAAATGGACCGAGATATGTTGTGGGTTGTCGTCGACAGCTTGACAAAAGTAAACTGAA
GCCAGGAACAAGAGTTGCTTTGGATATGACTACACTAACTATCATGAGATATTTGCCAAGAGAGGTGGATCCACTGGTTT
ATAACATGTCTCATGAGGACCCTGGGAATGTTTCTTATTCTGAGATTGGAGGCCTATCAGAACAGATCCGGGAATTAAGA
GAGGTGATAGAATTACCTCTTACAAACCCGGAGTTGTTTCAGCGTGTAGGAATAATACCTCCAAAAGGCTGTTTGTTATA
TGGACCACCAGGTACGGGAAAAACACTCTTGGCACGAGCCGTTGCTAGCCAGCTGGACTGCAATTTCTTAAAGGTTGTAT
CTAGTTCTATTGTAGACAAGTACATTGGTGAAAGTGCTCGTTTGATCAGAGAAATGTTTAATTATGCCAGGGACCATCAA
CCATGCATCATTTTTATGGATGAAATAGATGCTATTGGTGGTCGTCGGTTTTCTGAGGGTACTTCAGCTGACAGAGAGAT
TCAGAGGACTTTAATGGAGTTATTGAATCAAATGGATGGATTTGATACTCTGCATAGAGTTAAAATGATCATGGCTACAA
ACAGACCAGATACACTGGATCCTGCTTTGCTGCGTCCAGGAAGATTAGATAGAAAAATACATATTGATTTGCCAAATGAA
CAAGCAAGATTAGACATACTGAAAATCCATGCAGGCCCCATTACAAAGCATGGTGAAATAGATTATGAAGCAATTGTGAA
GCTTTCAGATGGCTTTAATGGAGCAGACCTGAGAAATGTTTGTACTGAAGCAGGTATGTTTGCAATTCGTGCTGATCATG
ATTTTGTAGTACAGGAAGACTTCATGAAAGCAGTCAGAAAAGTGGCTGATTCTAAGAAACTAGAGTCTAAATTGGACTAC
AAACCTGTGTAA

Library Parental gene expression (RPM)
SRP051959_colon 32 .04 RPM
SRP051959_heart 33 .41 RPM
SRP051959_kidney 35 .41 RPM
SRP051959_liver 34 .66 RPM
SRP051959_lung 27 .13 RPM
SRP051959_lymph_node 29 .79 RPM
SRP051959_skeletal_muscle 44 .18 RPM
SRP051959_spleen 29 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000009477 ortholog_many2many 1 retrogene
retro_cpor_47,
Homo sapiens ENSG00000100519 ortholog_one2many 2 retrogenes
retro_hsap_1022, retro_hsap_4059,
Gorilla gorilla ENSGGOG00000002152 ortholog_one2many 2 retrogenes
retro_ggor_2727, retro_ggor_808,
Macropus eugenii ENSMEUG00000007084 ortholog_one2many 3 retrogenes
retro_meug_1700, retro_meug_2090, retro_meug_923,
Monodelphis domestica ENSMODG00000014500 ortholog_one2many 1 retrogene
retro_mdom_438,
Nomascus leucogenys ENSNLEG00000012518 ortholog_one2many 2 retrogenes
retro_nleu_559, retro_nleu_900,
Otolemur garnettii ENSOGAG00000010011 ortholog_one2many 1 retrogene
retro_ogar_3101,
Pongo abelii ENSPPYG00000005820 ortholog_one2many 2 retrogenes
retro_pabe_3334, retro_pabe_858,
Pan troglodytes ENSPTRG00000006352 ortholog_one2many 2 retrogenes
retro_ptro_2752, retro_ptro_699,
Rattus norvegicus ENSRNOG00000007203 ortholog_one2many 1 retrogene
retro_rnor_1480,
Tursiops truncatus ENSTTRG00000003880 ortholog_one2many 1 retrogene
retro_ttru_117,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_204 97.72 98.01
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2. retro_cjac_3221 80.67 73.70
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Download FASTA sequences of all ENSCJAG00000007126 retrocopies