RetrogeneDB ID: | retro_cjac_3221 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 9:57798920..57799802(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC6 | ||
Ensembl ID: | ENSCJAG00000007126 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.67 % |
Parental protein coverage: | 73.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | IPYERRLLIMADPRDKALQDYR-KKLLEHKEIDGRLKELREQLKELT-KQYEKSENDLKALQSVGQIVGE |
I.....LL.M.DPRDKALQDY..KKLLEH.EID.RLKELR.QLKELT.KQYEKSENDLK.L.SVGQ.VGE | |
Retrocopy | IERRKQLLFMVDPRDKALQDYP<KKLLEHREIDSRLKELRKQLKELT<KQYEKSENDLKVLPSVGQTVGE |
Parental | VLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN |
VLKQLTEEKFIVKATNGPR.VVGCR.QLDKSKLKPG.RVAL.MTT.T.MRYLPREVDPL...MSHEDPGN | |
Retrocopy | VLKQLTEEKFIVKATNGPRNVVGCRQQLDKSKLKPGIRVALEMTTRTLMRYLPREVDPLIHDMSHEDPGN |
Parental | VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL-LYGPPGTGKTLLARAVASQLDCNFLKV |
VSYSEIGGL..QIRELREV....L....LFQ..GIIPPKGCL..Y.PPGT.KTLLA.A.AS.LDCNFLK. | |
Retrocopy | VSYSEIGGLAKQIRELREVNY--LFHTQLFQHIGIIPPKGCL<VYRPPGTVKTLLAQAIASRLDCNFLKA |
Parental | VSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD |
VSS.IVDKYIGESARLIREMFNYARD.QP.IIF.DE.D.IGGR.FSEGTSADRE..RTLMELLNQMDG.D | |
Retrocopy | VSSFIVDKYIGESARLIREMFNYARDRQP*IIFIDEMDGIGGRWFSEGTSADRECHRTLMELLNQMDGVD |
Parental | TLHRVKMIMATNRPDTLDPA |
TLHRVKM..ATNRP.TLDPA | |
Retrocopy | TLHRVKMVVATNRPNTLDPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 32 .04 RPM |
SRP051959_heart | 0 .00 RPM | 33 .41 RPM |
SRP051959_kidney | 0 .02 RPM | 35 .41 RPM |
SRP051959_liver | 0 .00 RPM | 34 .66 RPM |
SRP051959_lung | 0 .00 RPM | 27 .13 RPM |
SRP051959_lymph_node | 0 .00 RPM | 29 .79 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 44 .18 RPM |
SRP051959_spleen | 0 .02 RPM | 29 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007126 | 2 retrocopies |
retro_cjac_204, retro_cjac_3221 ,
|
Cavia porcellus | ENSCPOG00000009477 | 1 retrocopy | |
Homo sapiens | ENSG00000100519 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002152 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007084 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000014500 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012518 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010011 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005820 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006352 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000007203 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003880 | 1 retrocopy |