Parental gene: | PSMC6, ENSPTRG00000006352 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 14:51655460..51677943(+) |
>ENSPTRG00000006352
ATGGCCATTCCCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGACCCTAGAGATAAGGCGCTTCAGGACTACCG
CAAGAAGTTGCTTGAACACAAGGAGATCGACGGCCGTCTTAAGGAGTTAAGGGAACAATTAAAAGAACTTACCAAGCAGT
ATGAAAAGTCTGAAAATGATCTGAAGGCCCTACAGAGTGTTGGGCAGATCGTGGGTGAAGTGCTTAAACAGTTAACTGAA
GAAAAATTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGTGGGTTGTCGTCGACAGCTTGACAAAAGTAAGCTGAA
GCCAGGAACAAGAGTTGCTTTGGATATGACTACACTAACTATCATGAGATATTTGCCGAGAGAGGTGGATCCACTGGTTT
ATAACATGTCTCATGAGGACCCTGGGAATGTTTCTTATTCTGAGATTGGAGGGCTATCAGAACAGATCCGGGAATTAAGA
GAGGTGATAGAATTACCTCTTACAAACCCAGAGTTATTTCAGCGTGTAGGAATAATACCTCCAAAAGGCTGTTTGTTATA
TGGACCACCAGGTACGGGAAAAACACTCTTGGCACGAGCCGTTGCTAGCCAGCTGGACTGCAATTTCTTAAAGGTTGTAT
CTAGTTCTATTGTAGACAAGTACATTGGTGAAAGTGCTCGTTTGATCAGAGAAATGTTTAATTATGCTAGAGATCATCAA
CCATGCATCATTTTTATGGATGAAATAGATGCTATTGGTGGTCGTCGGTTTTCTGAGGGTACTTCAGCTGACAGAGAGAT
TCAGAGAACGTTAATGGAGTTACTGAATCAAATGGATGGATTTGATACTCTGCATAGAGTTAAAATGATCATGGCTACAA
ACAGACCAGATACACTGGATCCTGCTTTGCTGCGTCCAGGAAGATTAGATAGAAAAATACATATTGATTTGCCAAATGAA
CAAGCAAGATTAGACATACTGAAAATCCATGCAGGTCCCATTACAAAGCATGGTGAAATAGATTATGAAGCAATTGTGAA
GCTTTCGGATGGCTTTAATGGAGCAGATCTGAGAAATGTTTGTACTGAAGCAGGTATGTTCGCAATTCGTGCTGATCATG
ATTTTGTAGTACAGGAAGACTTCATGAAAGCAGTCAGAAAAGTGGCTGATTCTAAGAAGCTGGAGTCTAAATTGGACTAC
AAACCTGTGTAA
ATGGCCATTCCCGGCATCCCCTATGAGAGACGGCTTCTCATCATGGCGGACCCTAGAGATAAGGCGCTTCAGGACTACCG
CAAGAAGTTGCTTGAACACAAGGAGATCGACGGCCGTCTTAAGGAGTTAAGGGAACAATTAAAAGAACTTACCAAGCAGT
ATGAAAAGTCTGAAAATGATCTGAAGGCCCTACAGAGTGTTGGGCAGATCGTGGGTGAAGTGCTTAAACAGTTAACTGAA
GAAAAATTCATTGTTAAAGCTACCAATGGACCAAGATATGTTGTGGGTTGTCGTCGACAGCTTGACAAAAGTAAGCTGAA
GCCAGGAACAAGAGTTGCTTTGGATATGACTACACTAACTATCATGAGATATTTGCCGAGAGAGGTGGATCCACTGGTTT
ATAACATGTCTCATGAGGACCCTGGGAATGTTTCTTATTCTGAGATTGGAGGGCTATCAGAACAGATCCGGGAATTAAGA
GAGGTGATAGAATTACCTCTTACAAACCCAGAGTTATTTCAGCGTGTAGGAATAATACCTCCAAAAGGCTGTTTGTTATA
TGGACCACCAGGTACGGGAAAAACACTCTTGGCACGAGCCGTTGCTAGCCAGCTGGACTGCAATTTCTTAAAGGTTGTAT
CTAGTTCTATTGTAGACAAGTACATTGGTGAAAGTGCTCGTTTGATCAGAGAAATGTTTAATTATGCTAGAGATCATCAA
CCATGCATCATTTTTATGGATGAAATAGATGCTATTGGTGGTCGTCGGTTTTCTGAGGGTACTTCAGCTGACAGAGAGAT
TCAGAGAACGTTAATGGAGTTACTGAATCAAATGGATGGATTTGATACTCTGCATAGAGTTAAAATGATCATGGCTACAA
ACAGACCAGATACACTGGATCCTGCTTTGCTGCGTCCAGGAAGATTAGATAGAAAAATACATATTGATTTGCCAAATGAA
CAAGCAAGATTAGACATACTGAAAATCCATGCAGGTCCCATTACAAAGCATGGTGAAATAGATTATGAAGCAATTGTGAA
GCTTTCGGATGGCTTTAATGGAGCAGATCTGAGAAATGTTTGTACTGAAGCAGGTATGTTCGCAATTCGTGCTGATCATG
ATTTTGTAGTACAGGAAGACTTCATGAAAGCAGTCAGAAAAGTGGCTGATTCTAAGAAGCTGGAGTCTAAATTGGACTAC
AAACCTGTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 32 .39 RPM |
| SRP007412_cerebellum | 18 .64 RPM |
| SRP007412_heart | 28 .74 RPM |
| SRP007412_kidney | 24 .27 RPM |
| SRP007412_liver | 16 .83 RPM |
| SRP007412_testis | 11 .59 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007126 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000009477 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000100519 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002152 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000007084 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000014500 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012518 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010011 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005820 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007203 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000003880 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_699 | 90.10 | 97.77 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2752 | 96.68 | 97.27 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000006352 retrocopies