Parental gene:

SNF8, ENSCJAG00000007322

Aliases:None
Description:SNF8, ESCRT-II complex subunit [Source:HGNC Symbol;Acc:17028]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:108614558..108629176(+)


>ENSCJAG00000007322
ATGCACCGCCGCGGGGTGGGAGCTGGCGCCATCGCCAAGAAAAAACTTGCAGAGGCCAAGTATAAGGAGCGAGGGACGGT
CTTGGCCGAGGACCAACTAGCCCAGATGTCAAAGCAGTTGGACATGTTCAAGACAAACCTGGAAGAATTTGCTAGCAAGC
ACAAGCAGGAGATCCGGAAGAATCCTGAGTTCCGCGTGCAGTTCCAGGACATGTGTGCAACCATTGGCGTGGATCCTCTG
GCCTCATTTTCTCTCTTTTTTAAAAAAATGTTTAATTTTTACTATGAACTAGGTGTCCAAATTATCGAAGTGTGCCTGGC
GCTGAAGCATCGGAATGGAGAACAAAAGATTACTAGCCATACTCATTGCAAATTATTCTCAGGAAGAGGACCCTGTCTTT
TTACTGATGTAGTTGAAGACGACCTGATCAGGGCCATCAAGAAACTAAAGGCACTTGGGACTGGCTTCTGCATCATCCCT
GTGGGCGGCACTTACCTCATTCAGTCTGTTCCAGCTGAGCTCAATATGGATCACACAGTGGTGCTGCAGCTGGCAGAGAA
AAATGGCTACGTGACTGTCAGTGAGATCAAAGCCAGTCTTAAATGGGAGACCGAGCGAGCGCGCCAAGTGCTGGAACACC
TGCTGAAGGAAGGGCTGGCGTGGCTGGACTTGCAGGCACCAGGAGAGGCCCACTACTGGCTGCCAGCTCTCTTCACTGAC
CTCTACTCCCAGGAGATTACAGCTGAGGAGGCCAGAGAAGCCCTTCCCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 8 .68 RPM
SRP051959_skeletal_muscle 7 .34 RPM
SRP051959_lymph_node 9 .73 RPM
SRP051959_lung 8 .30 RPM
SRP051959_liver 7 .06 RPM
SRP051959_kidney 9 .70 RPM
SRP051959_heart 7 .24 RPM
SRP051959_colon 7 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005062 ortholog_one2one 1 retrogene
retro_amel_164,
Canis familiaris ENSCAFG00000016893 ortholog_one2one 1 retrogene
retro_cfam_1488,
Choloepus hoffmanni ENSCHOG00000013760 ortholog_one2one 1 retrogene
retro_chof_1372,
Echinops telfairi ENSETEG00000000758 ortholog_one2one 1 retrogene
retro_etel_709,
Felis catus ENSFCAG00000008944 ortholog_one2one 2 retrogenes
retro_fcat_1291, retro_fcat_574,
Homo sapiens ENSG00000159210 ortholog_one2one 1 retrogene
retro_hsap_2394,
Gorilla gorilla ENSGGOG00000025290 ortholog_one2one 1 retrogene
retro_ggor_1816,
Macropus eugenii ENSMEUG00000016638 ortholog_one2one 1 retrogene
retro_meug_663,
Mustela putorius furo ENSMPUG00000015356 ortholog_one2one 1 retrogene
retro_mputfur_1425,
Mus musculus ENSMUSG00000006058 ortholog_one2one 1 retrogene
retro_mmus_1050,
Nomascus leucogenys ENSNLEG00000002743 ortholog_one2one 1 retrogene
retro_nleu_2520,
Oryctolagus cuniculus ENSOCUG00000009156 ortholog_one2one 2 retrogenes
retro_ocun_814, retro_ocun_996,
Pongo abelii ENSPPYG00000008911 ortholog_one2one 1 retrogene
retro_pabe_2161,
Tarsius syrichta ENSTSYG00000004576 ortholog_one2one 1 retrogene
retro_tsyr_843,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1175 78.46 100.00
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2. retro_cjac_1922 73.85 100.00
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Download FASTA sequences of all ENSCJAG00000007322 retrocopies