RetrogeneDB ID: | retro_mmus_1050 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:96376929..96377627(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Snf8 | ||
Ensembl ID: | ENSMUSG00000006058 | ||
Aliases: | Snf8, D11Moh34 | ||
Description: | SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1343161] |
Percent Identity: | 96.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MHRRGVGAGAIAKKKLAEAKYK-ERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQ |
MHRRG.G.GAIAKKKLAEAKYK.ERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQE.RKNPEFRVQFQ | |
Retrocopy | MHRRGMGFGAIAKKKLAEAKYK<ERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQETRKNPEFRVQFQ |
Parental | DMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDV |
DMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDV | |
Retrocopy | DMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDV |
Parental | SQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEEHLLKEGLAWLDLQAPGEAHY |
SQDDLIRAIKKLKALGTGFGIIPVGGT.LIQSVPAELNMDHTVVLQLAEE.LLKEGLAWLDLQAPGEAH. | |
Retrocopy | SQDDLIRAIKKLKALGTGFGIIPVGGT*LIQSVPAELNMDHTVVLQLAEEYLLKEGLAWLDLQAPGEAHN |
Parental | WLPALFTDLYSQEISAEEAKEAFP |
WLPALFT.LYSQEISAEEAKEA.P | |
Retrocopy | WLPALFTGLYSQEISAEEAKEALP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 35 .04 RPM |
SRP007412_cerebellum | 0 .04 RPM | 25 .97 RPM |
SRP007412_heart | 0 .03 RPM | 16 .50 RPM |
SRP007412_kidney | 0 .06 RPM | 26 .66 RPM |
SRP007412_liver | 0 .05 RPM | 25 .29 RPM |
SRP007412_testis | 0 .14 RPM | 34 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005062 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016893 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013760 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007322 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000000758 | 1 retrocopy | |
Felis catus | ENSFCAG00000008944 | 2 retrocopies | |
Homo sapiens | ENSG00000159210 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025290 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016638 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015356 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006058 | 1 retrocopy |
retro_mmus_1050 ,
|
Nomascus leucogenys | ENSNLEG00000002743 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009156 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008911 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004576 | 1 retrocopy |