Parental gene:

ENSCJAG00000007730

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:10459881..10475295(-)


>ENSCJAG00000007730
ATGGCGGAACGCGGGTACAGCTTTTCGCTGACTACATTCAGCCCATCTGGTAAACTTGTCCAGATTGAATATGCTTTGGC
TGCTGTAGCTGGAGGAGCCCCGTCAGTGGGAATTAAAGCGGCAAATGGTGTGGTATTAGCAACTGAGAAAAAACAGAAAT
CCATTCTGTATGACGAGCGAAGTGTGCACAAAGTAGAGCCCATTACCAAGCACATCGGTTTGGTGTACAGCGGCATGGGC
CCAGACTACAGAGTGCTTGTGCACAGAGCTCGAAAACTAGCTCAACAGTACTATCTCGTGTACCAAGAACCCATTCCCAC
AGCTCAGCTGGTACAGAGAGTAGCTTCTGTGATGCAGGAGTATACTCAGTCAGGTGGTGTTCGTCCGTTTGGAGTTTCTT
TACTTATTTGTGGTTGGAATGAAGGGCGACCATATTTATTTCAGTCAGATCCATCTGGAGCATACTTTGCCTGGAAAGCC
ACAGCAATGGGAAAGAACTATGTAAATGGGAAAACTTTCCTTGAGAAAAGATATAATGAAGATCTGGAACTTGAAGATGC
CATTCATACAGCCATCTTAACCCTAAAGGAAAGCTTTGAAGGGCAAATGACAGAGGATAACATAGAAGTTGGAATCTGCA
ATGAAGCTGGATTTAGGAGGCTGACTCCCACTGAAGTTAAGGATTACCTGGCTGCCATAGCATAA

Library Parental gene expression (RPM)
SRP051959_colon 34 .66 RPM
SRP051959_heart 31 .10 RPM
SRP051959_kidney 34 .48 RPM
SRP051959_liver 38 .90 RPM
SRP051959_lung 29 .53 RPM
SRP051959_lymph_node 40 .34 RPM
SRP051959_skeletal_muscle 43 .92 RPM
SRP051959_spleen 41 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000000990 ortholog_one2one 3 retrogenes
retro_btau_296, retro_btau_384, retro_btau_889,
Choloepus hoffmanni ENSCHOG00000000644 ortholog_one2one 1 retrogene
retro_chof_893,
Cavia porcellus ENSCPOG00000013134 ortholog_one2one 1 retrogene
retro_cpor_1512,
Dasypus novemcinctus ENSDNOG00000011910 ortholog_one2one 2 retrogenes
retro_dnov_2202, retro_dnov_724,
Echinops telfairi ENSETEG00000015835 ortholog_one2one 2 retrogenes
retro_etel_1569, retro_etel_2022,
Homo sapiens ENSG00000106588 ortholog_one2many 2 retrogenes
retro_hsap_2199, retro_hsap_908,
Gorilla gorilla ENSGGOG00000006538 ortholog_one2one 1 retrogene
retro_ggor_735,
Myotis lucifugus ENSMLUG00000010086 possible_ortholog 2 retrogenes
retro_mluc_1050, retro_mluc_135,
Macaca mulatta ENSMMUG00000022451 ortholog_one2one 2 retrogenes
retro_mmul_1114, retro_mmul_923,
Nomascus leucogenys ENSNLEG00000003177 ortholog_one2one 1 retrogene
retro_nleu_329,
Oryctolagus cuniculus ENSOCUG00000012092 ortholog_one2one 1 retrogene
retro_ocun_774,
Ochotona princeps ENSOPRG00000011793 ortholog_one2one 2 retrogenes
retro_opri_135, retro_opri_791,
Pongo abelii ENSPPYG00000017612 ortholog_one2one 2 retrogenes
retro_pabe_2076, retro_pabe_783,
Pan troglodytes ENSPTRG00000019120 ortholog_one2one 2 retrogenes
retro_ptro_1670, retro_ptro_628,
Ictidomys tridecemlineatus ENSSTOG00000013334 ortholog_one2one 1 retrogene
retro_itri_223,
Tarsius syrichta ENSTSYG00000014299 ortholog_one2one 2 retrogenes
retro_tsyr_132, retro_tsyr_246,
Tursiops truncatus ENSTTRG00000005649 ortholog_one2one 1 retrogene
retro_ttru_356,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_852 70.14 93.16
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2. retro_cjac_1096 93.22 100.00
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3. retro_cjac_1868 78.30 99.57
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4. retro_cjac_2583 86.02 100.00
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Download FASTA sequences of all ENSCJAG00000007730 retrocopies