RetrogeneDB ID: | retro_ptro_1670 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 2B:206942256..206942863(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA2 | ||
Ensembl ID: | ENSPTRG00000019120 | ||
Aliases: | None | ||
Description: | Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:H2R5C6] |
Percent Identity: | 89.27 % |
Parental protein coverage: | 86.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAERG-YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPIT |
MAERG.Y.FSLTTFSPS.KLV.IEYALAA.AGGA.SVGIKAANGVVLATEKKQK.ILYDERSV.KVEPIT | |
Retrocopy | MAERG<YGFSLTTFSPSDKLVRIEYALAAIAGGALSVGIKAANGVVLATEKKQKFILYDERSVDKVEPIT |
Parental | KHIGLVYSGMGPDYRVLVHRAR-KLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICG |
KHIGLVYSG.GPD.RVLVH.AR.KLAQQYYLVYQ.PIPTAQLV.RVASVMQEYTQSGGV.PFGVSLL.CG | |
Retrocopy | KHIGLVYSGVGPDNRVLVHTAR<KLAQQYYLVYQVPIPTAQLVRRVASVMQEYTQSGGVCPFGVSLLVCG |
Parental | WNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQM |
WNEG.PYLFQSDPSGAY.AWKATA.GKNYVNGKT.LEKR.NEDLELEDAIHTA.LTLKESFEGQM | |
Retrocopy | WNEGQPYLFQSDPSGAYLAWKATAVGKNYVNGKTSLEKR*NEDLELEDAIHTAMLTLKESFEGQM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 27 .15 RPM |
SRP007412_cerebellum | 0 .07 RPM | 33 .20 RPM |
SRP007412_heart | 0 .00 RPM | 49 .34 RPM |
SRP007412_kidney | 0 .00 RPM | 64 .31 RPM |
SRP007412_liver | 0 .00 RPM | 79 .09 RPM |
SRP007412_testis | 1 .48 RPM | 57 .64 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2199 |
Pongo abelii | retro_pabe_2076 |
Macaca mulatta | retro_mmul_923 |