Parental gene:

MMU.710, ENSMMUG00000022451

Aliases:None
Description:proteasome subunit alpha type-2 [Source:RefSeq peptide;Acc:NP_001253810]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:3:83346641..83361702(+)


>ENSMMUG00000022451
ATGGCGGAGCGCGGGTACAGCTTTTCGCTGACTACATTCAGCCCGTCTGGTAAACTTGTCCAGATTGAATATGCTTTGGC
TGCTGTAGCTGGAGGAGCCCCGTCAGTGGGAATTAAAGCTGCAAATGGTGTGGTATTAGCAACTGAGAAAAAACAGAAAT
CCATTCTGTATGATGAGCGAAGTGTACACAAAGTGGAACCAATTACCAAGCATATAGGTTTGGTGTACAGTGGCATGGGC
CCCGATTACAGAGTGCTTGTGCACAGAGCTCGAAAGCTAGCTCAACAGTACTATCTTGTGTACCAAGAACCCATTCCTAC
AGCTCAGCTAGTACAGAGAGTAGCTTCTGTGATGCAAGAATATACTCAGTCAGGTGGTGTTCGTCCATTTGGAGTTTCTT
TACTTATTTGTGGTTGGAATGAGGGACGACCATATTTATTTCAGTCAGATCCATCTGGAGCTTACTTTGCCTGGAAAGCT
ACAGCAATGGGAAAGAACTATGTGAATGGGAAAACTTTCCTTGAGAAAAGGTATAATGAAGATCTGGAACTTGAAGATGC
CATTCATACAGCCATCTTAACCCTAAAGGAAAGCTTTGAAGGGCAAATGACAGAGGATAACATAGAAGTTGGAATCTGCA
ATGAAGCTGGATTTAGAAGACTTACTCCAACTGAAGTTAAGGATTACTTGGCTGCCATAGCATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 25 .78 RPM
SRP007412_brain 29 .81 RPM
SRP007412_cerebellum 36 .29 RPM
SRP007412_heart 36 .27 RPM
SRP007412_kidney 50 .82 RPM
SRP007412_liver 38 .52 RPM
SRP007412_testis 36 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000000990 ortholog_one2one 3 retrogenes
retro_btau_296, retro_btau_384, retro_btau_889,
Choloepus hoffmanni ENSCHOG00000000644 ortholog_one2one 1 retrogene
retro_chof_893,
Callithrix jacchus ENSCJAG00000007730 ortholog_one2one 4 retrogenes
retro_cjac_1096, retro_cjac_1868, retro_cjac_2583, retro_cjac_852,
Cavia porcellus ENSCPOG00000013134 ortholog_one2one 1 retrogene
retro_cpor_1512,
Dasypus novemcinctus ENSDNOG00000011910 ortholog_one2one 2 retrogenes
retro_dnov_2202, retro_dnov_724,
Echinops telfairi ENSETEG00000015835 ortholog_one2one 2 retrogenes
retro_etel_1569, retro_etel_2022,
Homo sapiens ENSG00000106588 ortholog_one2many 2 retrogenes
retro_hsap_2199, retro_hsap_908,
Gorilla gorilla ENSGGOG00000006538 ortholog_one2one 1 retrogene
retro_ggor_735,
Myotis lucifugus ENSMLUG00000010086 possible_ortholog 2 retrogenes
retro_mluc_1050, retro_mluc_135,
Nomascus leucogenys ENSNLEG00000003177 ortholog_one2one 1 retrogene
retro_nleu_329,
Oryctolagus cuniculus ENSOCUG00000012092 ortholog_one2one 1 retrogene
retro_ocun_774,
Ochotona princeps ENSOPRG00000011793 ortholog_one2one 2 retrogenes
retro_opri_135, retro_opri_791,
Pongo abelii ENSPPYG00000017612 ortholog_one2one 2 retrogenes
retro_pabe_2076, retro_pabe_783,
Pan troglodytes ENSPTRG00000019120 ortholog_one2one 2 retrogenes
retro_ptro_1670, retro_ptro_628,
Ictidomys tridecemlineatus ENSSTOG00000013334 ortholog_one2one 1 retrogene
retro_itri_223,
Tarsius syrichta ENSTSYG00000014299 ortholog_one2one 2 retrogenes
retro_tsyr_132, retro_tsyr_246,
Tursiops truncatus ENSTTRG00000005649 ortholog_one2one 1 retrogene
retro_ttru_356,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_923 82.45 79.91
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2. retro_mmul_1114 62.67 94.02
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Download FASTA sequences of all ENSMMUG00000022451 retrocopies