Parental gene: | PSMB5, ENSCJAG00000008299 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) subunit, beta type, 5 [Source:HGNC Symbol;Acc:9542] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:47099085..47109238(-) |
>ENSCJAG00000008299
ATGCCCACACTAGACATGGCGCTAGCCAGCGTGTTGGAGAGACAGCTACCGGTGAACCAGCCCGGGTTTTTCGGACTCGG
GGGTCGTGCAGATCTGTTGGATCTGGGTCCAGGAAGTCCCAGTGATGGGCTGACCCTGGCCATGCCAGGCTGGAGTGTCC
CAGAGGAGCCAGGAATCGAAATGCTTCATGGAACAACCACCCTGGCCTTCAAGTTCCGCCATGGAGTCATAGTTGCGGCT
GACTCCAGGGCTACAGCAGGTGCTTACATTGCCTCCCAGACGGTGAAGAAGGTGATAGAGATCAACCCATACCTGCTGGG
CACCATGGCTGGGGGCGCAGCAGATTGCAGCTTCTGGGAACGGCTGTTGGCTCGGCAATGTCGAATCTATGAGCTTCGCA
ATAAGGAACGCATCTCTGTAGCAGCTGCCTCCAAGCTGCTTGCCAACATGGTGTATCAGTACAAAGGCATGGGGCTGTCC
ATGGGCACCATGATCTGTGGCTGGGATAAGAGAGGCCCTGGCCTCTACTACGTGGACAGTGAAGGGAACCGGATCTCAGG
GGCCACATTCTCTGTAGGTTCTGGCTCTGTGTATGCGTATGGGGTCATGGATCGGGGCTATTCCTATGACCTGGAAGTGG
AGGAGGCCTATGATTTGGCCCGTCGAGCCATCTACCAAGCCACCTACAGAGACGCCTACTCAGGAGGTGCTGTCAACCTC
TACCATGTGCGGGAAGATGGCTGGATCCGAGTCTCCAGTGACAATGTGGCTGATCTGCATGAGAAGTATAGTGGCTCTGC
TCCCTGA
ATGCCCACACTAGACATGGCGCTAGCCAGCGTGTTGGAGAGACAGCTACCGGTGAACCAGCCCGGGTTTTTCGGACTCGG
GGGTCGTGCAGATCTGTTGGATCTGGGTCCAGGAAGTCCCAGTGATGGGCTGACCCTGGCCATGCCAGGCTGGAGTGTCC
CAGAGGAGCCAGGAATCGAAATGCTTCATGGAACAACCACCCTGGCCTTCAAGTTCCGCCATGGAGTCATAGTTGCGGCT
GACTCCAGGGCTACAGCAGGTGCTTACATTGCCTCCCAGACGGTGAAGAAGGTGATAGAGATCAACCCATACCTGCTGGG
CACCATGGCTGGGGGCGCAGCAGATTGCAGCTTCTGGGAACGGCTGTTGGCTCGGCAATGTCGAATCTATGAGCTTCGCA
ATAAGGAACGCATCTCTGTAGCAGCTGCCTCCAAGCTGCTTGCCAACATGGTGTATCAGTACAAAGGCATGGGGCTGTCC
ATGGGCACCATGATCTGTGGCTGGGATAAGAGAGGCCCTGGCCTCTACTACGTGGACAGTGAAGGGAACCGGATCTCAGG
GGCCACATTCTCTGTAGGTTCTGGCTCTGTGTATGCGTATGGGGTCATGGATCGGGGCTATTCCTATGACCTGGAAGTGG
AGGAGGCCTATGATTTGGCCCGTCGAGCCATCTACCAAGCCACCTACAGAGACGCCTACTCAGGAGGTGCTGTCAACCTC
TACCATGTGCGGGAAGATGGCTGGATCCGAGTCTCCAGTGACAATGTGGCTGATCTGCATGAGAAGTATAGTGGCTCTGC
TCCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 10 .55 RPM |
| SRP051959_skeletal_muscle | 24 .55 RPM |
| SRP051959_lymph_node | 5 .43 RPM |
| SRP051959_lung | 9 .52 RPM |
| SRP051959_liver | 20 .77 RPM |
| SRP051959_kidney | 16 .95 RPM |
| SRP051959_heart | 14 .56 RPM |
| SRP051959_colon | 20 .97 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000100804 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000026856 | ortholog_one2one | 2 retrogenes | |
| Latimeria chalumnae | ENSLACG00000015194 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000003572 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000014281 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000006007 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000022193 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000014891 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013109 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005654 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000002036 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_35 | 54.68 | 75.75 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1983 | 68.01 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3888 | 69.85 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_4076 | 76.50 | 79.85 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000008299 retrocopies