Parental gene:

PSMB5, ENSPPYG00000005654

Aliases:None
Description:Proteasome subunit beta type-5 [Source:UniProtKB/Swiss-Prot;Acc:Q5R8S2]
Organism:Orangutan (Pongo abelii)
Coordinates:14:22496683..22509246(-)


>ENSPPYG00000005654
ATGGCGCTTGCCAGCGTGTTGGAGAGACCGCTACCGGTGAACCAGCGCGGGTTTTTCGGACTTGGGGGTCGTGCAGATCT
GCTGGATCTAGGTCCAGGGAGTCTCAGTGATGGTCTGAGCCTGGCCGCGCCCGGCTGGGGTGTCCCAGAAGAGCCAGGAA
TCGAAATGCTTCATGGAACAACCACCCTGGCCTTCAAGTTCCGCCATGGAGTCATAGTTGCAGCTGACTCCAGGGCTACA
GCGGGTGCTTACATTGCCTCCCAGACGGTGAAGAAGGTGATAGAGATCAACCCGTACCTGCTAGGCACCATGGCTGGGGG
CGCAGCGGATTGCAGCTTCTGGGAACGGCTGTTGGCTCGGCAATGTCGAATCTATGAGCTTCGAAATAAGGAACGCATCT
CTGTAGCAGCTGCCTCCAAACTGCTTGCCAACATGGTGTATCAGTACAAAGGCATGGGGCTGTCCATGGGCACCATGATC
TGTGGCTGGGATAAGAGAGGCCCTGGCCTCTACTACGTGGACAGTGAAGGGAACCGGATTTCAGGGGCCACCTTCTCTGT
AGGTTCTGGCTCTGTGTATGCATATGGGGTCATGGATCGGGGCTATTCCTATGACCTGGAAGTGGAGCAGGCCTATGATC
TGGCCCGTCGAGCCATCTACCAAGCCACCTACAGAGATGCCTACTCAGGAGGTGCAGTCAACCTCTACCACGTGCGGGAG
GATGGCTGGATCCGAGTCTCCAGTGACAATGTAGCTGATCTACATGAGAAGTATAGTGGCTCTACCCCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 43 .51 RPM
SRP007412_cerebellum 27 .36 RPM
SRP007412_heart 24 .84 RPM
SRP007412_kidney 43 .79 RPM
SRP007412_liver 28 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008299 ortholog_one2many 4 retrogenes
retro_cjac_1983, retro_cjac_35, retro_cjac_3888, retro_cjac_4076,
Homo sapiens ENSG00000100804 ortholog_one2one 2 retrogenes
retro_hsap_1634, retro_hsap_95,
Gorilla gorilla ENSGGOG00000026856 possible_ortholog 2 retrogenes
retro_ggor_1232, retro_ggor_156,
Latimeria chalumnae ENSLACG00000015194 ortholog_many2many 1 retrogene
retro_lcha_3,
Macropus eugenii ENSMEUG00000003572 ortholog_one2many 1 retrogene
retro_meug_28,
Myotis lucifugus ENSMLUG00000014281 ortholog_one2many 1 retrogene
retro_mluc_1428,
Macaca mulatta ENSMMUG00000006007 ortholog_one2many 1 retrogene
retro_mmul_1558,
Mus musculus ENSMUSG00000022193 ortholog_one2many 1 retrogene
retro_mmus_2887,
Nomascus leucogenys ENSNLEG00000014891 ortholog_one2many 2 retrogenes
retro_nleu_1063, retro_nleu_2936,
Oryctolagus cuniculus ENSOCUG00000013109 ortholog_one2many 1 retrogene
retro_ocun_176,
Sus scrofa ENSSSCG00000002036 ortholog_many2many 1 retrogene
retro_sscr_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_171 54.19 77.19
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Download FASTA sequences of all ENSPPYG00000005654 retrocopies