Parental gene:

PSMB5, ENSG00000100804

Aliases:PSMB5, LMPX, MB1, X
Description:proteasome (prosome, macropain) subunit, beta type, 5 [Source:HGNC Symbol;Acc:9542]
Organism:Human (Homo sapiens)
Coordinates:14:23485751..23504439(-)


>ENSG00000100804
ATGGCGCTTGCCAGCGTGTTGGAGAGACCGCTACCGGTGAACCAGCGCGGGTTTTTCGGACTTGGGGGTCGTGCAGATCT
GCTGGATCTAGGTCCAGGGAGTCTCAGTGATGGTCTGAGCCTGGCCGCGCCAGGCTGGGGTGTCCCAGAAGAGCCAGGAA
TCGAAATGCTTCATGGAACAACCACCCTGGCCTTCAAGTTCCGCCATGGAGTCATAGTTGCAGCTGACTCCAGGGCTACA
GCGGGTGCTTACATTGCCTCCCAGACGGTGAAGAAGGTGATAGAGATCAACCCATACCTGCTAGGCACCATGGCTGGGGG
CGCAGCGGATTGCAGCTTCTGGGAACGGCTGTTGGCTCGGCAATGTCGAATCTATGAGCTTCGAAATAAGGAACGCATCT
CTGTAGCAGCTGCCTCCAAACTGCTTGCCAACATGGTGTATCAGTACAAAGGCATGGGGCTGTCCATGGGCACCATGATC
TGTGGCTGGGATAAGAGAGGCCCTGGCCTCTACTACGTGGACAGTGAAGGGAACCGGATTTCAGGGGCCACCTTCTCTGT
AGGTTCTGGCTCTGTGTATGCATATGGGGTCATGGATCGGGGCTATTCCTATGACCTGGAAGTGGAGCAGGCCTATGATC
TGGCCCGTCGAGCCATCTACCAAGCCACCTACAGAGATGCCTACTCAGGAGGTGCAGTCAACCTCTACCACGTGCGGGAG
GATGGCTGGATCCGAGTCTCCAGTGACAATGTGGCTGATCTACATGAGAAGTATAGTGGCTCTACCCCCTGA

Library Parental gene expression (RPM)
bodymap2_adipose 40 .33 RPM
bodymap2_adrenal 51 .87 RPM
bodymap2_brain 57 .17 RPM
bodymap2_breast 54 .05 RPM
bodymap2_colon 53 .00 RPM
bodymap2_heart 43 .48 RPM
bodymap2_kidney 62 .48 RPM
bodymap2_liver 56 .84 RPM
bodymap2_lung 38 .98 RPM
bodymap2_lymph_node 43 .25 RPM
bodymap2_ovary 45 .09 RPM
bodymap2_prostate 52 .24 RPM
bodymap2_skeletal_muscle 74 .26 RPM
bodymap2_testis 48 .66 RPM
bodymap2_thyroid 67 .10 RPM
bodymap2_white_blood_cells 18 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008299 ortholog_one2one 4 retrogenes
retro_cjac_1983, retro_cjac_35, retro_cjac_3888, retro_cjac_4076,
Latimeria chalumnae ENSLACG00000015194 ortholog_one2many 1 retrogene
retro_lcha_3,
Macropus eugenii ENSMEUG00000003572 ortholog_one2one 1 retrogene
retro_meug_28,
Myotis lucifugus ENSMLUG00000014281 ortholog_one2one 1 retrogene
retro_mluc_1428,
Macaca mulatta ENSMMUG00000006007 ortholog_one2one 1 retrogene
retro_mmul_1558,
Mus musculus ENSMUSG00000022193 ortholog_one2one 1 retrogene
retro_mmus_2887,
Nomascus leucogenys ENSNLEG00000014891 ortholog_one2one 2 retrogenes
retro_nleu_1063, retro_nleu_2936,
Oryctolagus cuniculus ENSOCUG00000013109 ortholog_one2one 1 retrogene
retro_ocun_176,
Pongo abelii ENSPPYG00000005654 ortholog_one2one 1 retrogene
retro_pabe_171,
Sus scrofa ENSSSCG00000002036 ortholog_one2many 1 retrogene
retro_sscr_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_95 54.68 77.19
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2. retro_hsap_1634 70.82 95.44
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Download FASTA sequences of all ENSG00000100804 retrocopies