Parental gene:

DDI2, ENSCJAG00000008625

Aliases:None
Description:DNA-damage inducible 1 homolog 2 (S. cerevisiae) [Source:HGNC Symbol;Acc:24578]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:49918675..49972023(+)


>ENSCJAG00000008625
ATGCTGCTCACCGTGTACTGTGTGCGGAGGGACCTCTCCGAGGTGACCTTTTCCCTCCAGGTCGACGCCGACTTTGAGCT
GCACAACTTCCGCGCACTGTGCGAGCTCGAGTCTGGCATCCCCGCAGCCGAGAGCCAGATCGTCTATGCTGAAAGACCTC
TCACAGACAACCACAGATCATTGGCTTCTTATGGCTTGAAAGATGGGGATGTTGTGATTTTACGACAGAAGGAGAATGCA
GACCCTCGACCTCCAGTGCAGTTCCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTGCCTGGCACATCAAGTCC
CCGGCCGCGCCAGCCACCAGGAACACAGCAGTCCCACTCATCTCCTGGAGAAATTGCTTCATCTCCTCAGGGCTTGGACA
ATCCAGCCTTGCTCCGAGATATGTTGCTGGCCAACCCGCATGAGCTGTCCTTGCTGAAGGAACGCAATCCACCCTTGGCA
GAAGCTCTGCTCAGTGGAGACCTTGAGAAATTTTCTAGAGTCCTGGTGGAGCAGCAGCAGGACCGAGCCCGGAGAGAGCA
AGAAAGGATTCGTCTGTTTTCTGCTGATCCCTTTGACCTTGAAGCTCAGGCCAAGATAGAAGAAGACATAAGGCAACAGA
ACATTGAAGAAAACATGACAATAGCTATGGAAGAGGCTCCAGAAAGTTTTGGCCAAGTAGTGATGCTTTATATTAACTGC
AAAGTGAACGGACATCCTGTGAAAGCCTTTGTTGACTCAGGTGCCCAGATGACTATTATGAGCCAAGCTTGTGCCGAAAG
GTGCAATATAATGAGACTGGTGGACCGTCGGTGGGCAGGGATTGCCAAAGGAGTGGGCACCCAGAAGATTATTGGAAGGG
TACATCTAGCTCAGGTTCAGATTGAAGGAGATTTTTTGGCATGTTCCTTCTCTATACTTGAGGAACAGCCCATGGACATG
CTTCTGGGACTGGACATGCTTAAACGGCATCAGTGTTCCATTGACTTGAAGAAAAATGTACTCGTGATCGGCACCACAGG
CTCCCAGACTACCTTTCTTCCTGAGGGAGAGCTACCAGAGTGCGCCCGGTTGGCATATGGGGCCGGACGAGAGGATGTGC
GGCCAGAGGAGATTGCAGACCAAGAATTAGCAGAAGCCCTTCAAAAATCAGCAGAGGATGCAGAGCGTCAGAAGCCATGA

Library Parental gene expression (RPM)
SRP051959_spleen 23 .36 RPM
SRP051959_skeletal_muscle 29 .11 RPM
SRP051959_lymph_node 20 .20 RPM
SRP051959_lung 22 .82 RPM
SRP051959_liver 20 .99 RPM
SRP051959_kidney 21 .32 RPM
SRP051959_heart 17 .10 RPM
SRP051959_colon 28 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011873 ortholog_one2one 1 retrogene
retro_amel_10,
Bos taurus ENSBTAG00000018718 ortholog_one2one 2 retrogenes
retro_btau_15, retro_btau_650,
Canis familiaris ENSCAFG00000016220 ortholog_one2one 1 retrogene
retro_cfam_193,
Cavia porcellus ENSCPOG00000020885 ortholog_one2one 1 retrogene
retro_cpor_88,
Equus caballus ENSECAG00000000762 ortholog_one2one 1 retrogene
retro_ecab_110,
Homo sapiens ENSG00000197312 ortholog_one2one 1 retrogene
retro_hsap_96,
Gorilla gorilla ENSGGOG00000013537 ortholog_one2one 1 retrogene
retro_ggor_143,
Macropus eugenii ENSMEUG00000006148 ortholog_one2one 1 retrogene
retro_meug_1364,
Myotis lucifugus ENSMLUG00000030669 ortholog_one2one 1 retrogene
retro_mluc_68,
Macaca mulatta ENSMMUG00000019912 ortholog_one2one 1 retrogene
retro_mmul_231,
Monodelphis domestica ENSMODG00000003515 ortholog_one2one 1 retrogene
retro_mdom_282,
Mustela putorius furo ENSMPUG00000016332 ortholog_one2one 1 retrogene
retro_mputfur_1509,
Mus musculus ENSMUSG00000078515 ortholog_one2one 1 retrogene
retro_mmus_67,
Oryctolagus cuniculus ENSOCUG00000023891 ortholog_one2one 1 retrogene
retro_ocun_249,
Otolemur garnettii ENSOGAG00000027709 ortholog_one2one 1 retrogene
retro_ogar_4,
Ochotona princeps ENSOPRG00000018448 ortholog_one2one 1 retrogene
retro_opri_4,
Pongo abelii ENSPPYG00000001841 ortholog_one2one 1 retrogene
retro_pabe_158,
Pan troglodytes ENSPTRG00000024059 ortholog_one2one 1 retrogene
retro_ptro_570,
Pteropus vampyrus ENSPVAG00000005084 ortholog_one2one 1 retrogene
retro_pvam_420,
Rattus norvegicus ENSRNOG00000012274 ortholog_one2one 1 retrogene
retro_rnor_2606,
Sus scrofa ENSSSCG00000003462 ortholog_one2one 1 retrogene
retro_sscr_6,
Ictidomys tridecemlineatus ENSSTOG00000019447 ortholog_one2one 1 retrogene
retro_itri_93,
Tarsius syrichta ENSTSYG00000002522 ortholog_one2one 1 retrogene
retro_tsyr_1120,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_196 74.33 65.16
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Download FASTA sequences of all ENSCJAG00000008625 retrocopies