Parental gene:

RAB11B, ENSCJAG00000010778

Aliases:None
Description:RAB11B, member RAS oncogene family [Source:HGNC Symbol;Acc:9761]
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:8061174..8076313(+)


>ENSCJAG00000010778
ATGGGGACTCGGGACGACGAGTACGACTACCTATTCAAAGTGGTGCTCATCGGGGACTCGGGCGTGGGCAAGAGCAACCT
GCTGTCCCGCTTCACCCGCAACGAGTTCAACCTGGAGAGCAAGAGCACCATTGGCGTGGAGTTCGCCACCCGCAGCATCC
AGGTGGACGGCAAGACCATCAAGGCACAGATCTGGGACACCGCCGGCCAGGAGCGCTACCGCGCCATCACCTCCGCGTAC
TACCGCGGTGCTGTGGGCGCCCTGCTGGTATATGACATCGCCAAGCACCTGACTTACGAGAACGTGGAGCGCTGGCTGAA
GGAGCTTCGGGACCATGCAGATAGCAACATCGTCATTATGCTGGTGGGGAACAAGAGTGACTTGCGCCACCTGCGGGCTG
TGCCCACCGACGAGGCCCGGGCCTTCGCAGAAAAGAACAACTTGTCCTTCATCGAAACCTCGGCCTTGGATTCCACCAAC
GTAGAGGAAGCCTTCAAGAACATTCTCACAGAGATCTACCACATCATGTCACAGAAACAGATCGCAGACTGTGCAGCCCA
CAAGTCCCCTGGGAACAACGTGGTGGACATCAGCGTGCTGCTCACGACAGATGGACAGAAGCCCAACAAGCTGCATTGCT
GCCAGAACCTGTGA

Library Parental gene expression (RPM)
SRP051959_colon 1 .86 RPM
SRP051959_heart 3 .61 RPM
SRP051959_kidney 2 .93 RPM
SRP051959_liver 1 .75 RPM
SRP051959_lung 2 .75 RPM
SRP051959_lymph_node 2 .58 RPM
SRP051959_skeletal_muscle 2 .01 RPM
SRP051959_spleen 2 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013525 ortholog_one2one 1 retrogene
retro_chof_1582,
Callithrix jacchus ENSCJAG00000007333 within_species_paralog 1 retrogene
retro_cjac_1050,
Callithrix jacchus ENSCJAG00000007715 within_species_paralog 1 retrogene
retro_cjac_1256,
Erinaceus europaeus ENSEEUG00000009165 ortholog_one2one 2 retrogenes
retro_eeur_284, retro_eeur_565,
Mus musculus ENSMUSG00000077450 ortholog_one2one 1 retrogene
retro_mmus_1846,
Otolemur garnettii ENSOGAG00000003227 ortholog_one2one 1 retrogene
retro_ogar_2405,
Petromyzon marinus ENSPMAG00000009335 ortholog_one2many 1 retrogene
retro_pmar_25,
Pteropus vampyrus ENSPVAG00000009645 ortholog_one2one 1 retrogene
retro_pvam_64,
Tupaia belangeri ENSTBEG00000000667 ortholog_one2one 1 retrogene
retro_tbel_4634,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3866 85.78 100.00
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2. retro_cjac_3917 87.70 86.18
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Download FASTA sequences of all ENSCJAG00000010778 retrocopies