Parental gene:

CS, ENSCJAG00000011275

Aliases:None
Description:citrate synthase [Source:HGNC Symbol;Acc:2422]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:45045740..45080652(-)


>ENSCJAG00000011275
ATGGCTTTACTCACTGCGGCCGCCCGGCTCTTGGGAACCAAGAATGCATCTTGTCTTGTTCTTGCTTCCCGGCATGCCAG
CGCTTCTTCCACGAATTTGAAAGACATATTGGCTGACCTGATACCTAAGGAGCAGGCCAGAATTAAGACCTTCCGGCAGC
AACATGGCAAGACGGTGGTGGGCCAAATCACTGTGGACATGATGTATGGTGGCATGAGAGGCATGAAGGGATTGGTCTAT
GAAACATCAGTTCTTGATCCTGATGAGGGCATCCGTTTCCGAGGCTATAGTATCCCTGAATGCCAAAAACTGCTGCCCAA
GGCTAAGGGTGGGGAAGAACCCTTGCCCGAGGGCTTATTTTGGCTGCTGGTAACTGGACAGATCCCAACAGAAGAACAGG
TATCTTGGCTCTCAAAAGAGTGGGCAAAGAGGGCAGCTCTGCCTTCCCATGTGGTCACCATGCTGGACAACTTTCCCACC
AATCTACACCCTATGTCTCAGCTCAGTGCAGCTGTTACAGCCCTCAACAGTGAAAGTAACTTTGCCCGAGCATATGCAGA
GGGTATCAGCCGAACCAAGTACTGGGAGTTGATTTATGAAGACTCTATGGATCTAATCGCAAAGCTACCTTGTGTTGCAG
CAAAGATCTACCGAAATCTCTACAGAGAAGGCAGTGGTATTGGGGCCATTGACTCTAAGCTGGACTGGTCCCACAATTTC
ACCAACATGTTAGGCTATACTGATGCTCAGTTCACTGAGCTCATGCGCCTATACCTCACCATCCACAGTGACCATGAGGG
CGGCAATGTAAGTGCCCATACCAGCCACTTGGTGGGCAGTGCCCTTTCAGACCCCTACCTGTCCTTTGCAGCAGCCATGA
ACGGGCTGGCAGGACCTCTCCATGGACTGGCAAACCAGGAAGTGCTTGTCTGGCTAACACAGCTACAGAAGGAAGTTGGC
AAAGATGTGTCAGATGAGAAGTTACGAGACTACATCTGGAACACACTCAACTCGGGACGGGTTGTTCCAGGCTATGGCCA
TGCAGTACTAAGAAAGACTGATCCACGATATACCTGTCAGCGAGAGTTTGCTCTGAAACACCTGCCTAATGACCCCATGT
TTAAGTTGGTTGCTCAGCTATACAAGATTGTGCCCAATGTCCTCTTAGAGCAGGGTAAGGCCAAGAACCCTTGGCCCAAT
GTAGATGCTCACAGTGGGGTGCTGCTTCAGTACTATGGAATGACGGAGATGAATTACTACACGGTCCTGTTTGGGGTATC
ACGCGCATTGGGTGTACTGGCACAGCTCATCTGGAGCCGAGCCTTAGGCTTCCCTCTAGAAAGGCCCAAGTCCATGAGCA
CAGAGGGTCTGATGAAGTTTGTGGACTCTAAGTCAGGGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 34 .60 RPM
SRP051959_skeletal_muscle 144 .68 RPM
SRP051959_lymph_node 31 .87 RPM
SRP051959_lung 37 .37 RPM
SRP051959_liver 25 .41 RPM
SRP051959_kidney 64 .01 RPM
SRP051959_heart 106 .29 RPM
SRP051959_colon 73 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004371 ortholog_one2one 1 retrogene
retro_btau_386,
Canis familiaris ENSCAFG00000000115 ortholog_one2one 1 retrogene
retro_cfam_765,
Choloepus hoffmanni ENSCHOG00000000397 ortholog_one2one 1 retrogene
retro_chof_1803,
Dasypus novemcinctus ENSDNOG00000010907 ortholog_one2one 2 retrogenes
retro_dnov_205, retro_dnov_468,
Echinops telfairi ENSETEG00000012035 ortholog_one2one 1 retrogene
retro_etel_584,
Homo sapiens ENSG00000062485 ortholog_one2one 2 retrogenes
retro_hsap_1972, retro_hsap_3621,
Gorilla gorilla ENSGGOG00000009096 ortholog_one2one 2 retrogenes
retro_ggor_1432, retro_ggor_2445,
Macropus eugenii ENSMEUG00000005657 ortholog_one2one 2 retrogenes
retro_meug_1078, retro_meug_1304,
Microcebus murinus ENSMICG00000017659 ortholog_one2one 2 retrogenes
retro_mmur_1322, retro_mmur_394,
Macaca mulatta ENSMMUG00000002483 ortholog_one2one 2 retrogenes
retro_mmul_1502, retro_mmul_1840,
Mus musculus ENSMUSG00000005683 ortholog_one2many 1 retrogene
retro_mmus_258,
Nomascus leucogenys ENSNLEG00000017514 ortholog_one2one 2 retrogenes
retro_nleu_1201, retro_nleu_809,
Oryctolagus cuniculus ENSOCUG00000007216 ortholog_one2one 1 retrogene
retro_ocun_1183,
Pongo abelii ENSPPYG00000004654 ortholog_one2one 1 retrogene
retro_pabe_2972,
Rattus norvegicus ENSRNOG00000023520 ortholog_one2one 1 retrogene
retro_rnor_2518,
Sorex araneus ENSSARG00000010093 ortholog_one2many 2 retrogenes
retro_sara_360, retro_sara_628,
Sus scrofa ENSSSCG00000021091 ortholog_one2many 1 retrogene
retro_sscr_321,
Sus scrofa ENSSSCG00000022858 ortholog_one2many 1 retrogene
retro_sscr_322,
Tupaia belangeri ENSTBEG00000006425 ortholog_one2one 1 retrogene
retro_tbel_4652,
Tarsius syrichta ENSTSYG00000004483 ortholog_one2one 1 retrogene
retro_tsyr_1659,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2031 78.03 100.00
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Download FASTA sequences of all ENSCJAG00000011275 retrocopies