RetrogeneDB ID: | retro_meug_1304 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold36228:8497..9303(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CS | ||
Ensembl ID: | ENSMEUG00000005657 | ||
Aliases: | None | ||
Description: | citrate synthase [Source:HGNC Symbol;Acc:2422] |
Percent Identity: | 88.52 % |
Parental protein coverage: | 59.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDTKLDWSHNFTSMLGYSDAQFTELMRLYLTIHSDHEG |
IYEDCMDLIAKLPCV.AKIY.NL...GSSI.AID.KLDWSHNFTSMLGYSD.QFTELM.LYLTIHSDHE. | |
Retrocopy | IYEDCMDLIAKLPCVTAKIYHNLCCKGSSIRAIDIKLDWSHNFTSMLGYSDDQFTELMYLYLTIHSDHES |
Parental | GNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGK-EVDDEKLRDYIWNTL |
GNVSAHTSHLVGSA..D.YLSFAAAMNGLAGPLHGL.NQEVLVWLTQLQKEVGK..V..EKL..YIWNTL | |
Retrocopy | GNVSAHTSHLVGSAFLDSYLSFAAAMNGLAGPLHGLVNQEVLVWLTQLQKEVGK<KVAGEKLHNYIWNTL |
Parental | NSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPDVLLEQGKAKNPWPNVDAHSG |
NSGRVVPG.GH..LRKTDPRYTCQ.EFALKHLPNDPMFKLVAQLYKIVPDVLLEQGKAKNPWPNVD.HSG | |
Retrocopy | NSGRVVPGFGHTILRKTDPRYTCQWEFALKHLPNDPMFKLVAQLYKIVPDVLLEQGKAKNPWPNVDVHSG |
Parental | VLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLMQFVSSKSG |
VLLQYY.MT.MNYYTV.FGVS.ALGVLAQL.WSR.LGFPLERPKSMSTDGLMQFVSSKSG | |
Retrocopy | VLLQYYSMTKMNYYTVFFGVSQALGVLAQLVWSRVLGFPLERPKSMSTDGLMQFVSSKSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |