RetrogeneDB ID: | retro_meug_1078 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold27962:11166..11973(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CS | ||
Ensembl ID: | ENSMEUG00000005657 | ||
Aliases: | None | ||
Description: | citrate synthase [Source:HGNC Symbol;Acc:2422] |
Percent Identity: | 77.86 % |
Parental protein coverage: | 59.51 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | LIYEDCMDLIAKLPCVAAK-IYRNLYREGSSIGAIDTKLDWSHNFTSMLGYSDAQFTELMRLYLTIHSDH |
LI.ED.MDLI.KLPCVA.K.IYRNLY.EGS.IG.ID.K.DWSH.FT.M.GYSDAQFTELM.L.LT.H.DH | |
Retrocopy | LI*EDYMDLISKLPCVAEK>IYRNLYHEGSNIGVIDNKTDWSHDFTRMSGYSDAQFTELMCLFLTFHRDH |
Parental | EGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKEVDDEKLRDYIWNT |
...NV..HTSH.VGSALSDPYLSFAA..NGLAGPLH.L.N.EVL.WL.QLQK.VGKEV..EK..DY.WNT | |
Retrocopy | KDCNVNVHTSHPVGSALSDPYLSFAAVKNGLAGPLHELVN*EVLIWLKQLQKKVGKEVANEKPCDYMWNT |
Parental | LNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPDVLLEQGKAKNPWPNVDAHS |
LNSGRVV.GYGHAV.RKTDP.YTCQ.EFALKH.PNDPMFKLV.QLYKIVPD.L..Q.KAKNP.PNVDAHS | |
Retrocopy | LNSGRVVSGYGHAVRRKTDPQYTCQQEFALKHIPNDPMFKLVPQLYKIVPDLLFKQVKAKNP*PNVDAHS |
Parental | GVLLQYYGMTEMNYYTVLFGVSRAL-GVLAQLIWSRALGFPLERPKSMSTDGLMQFVSSKS |
.VLLQYYGMTEMNY.T.LFGVS..L...LAQ...SRALGFPLERPKSMSTD.LMQFV.SKS | |
Retrocopy | VVLLQYYGMTEMNY*TALFGVSLVL<EMLAQFFCSRALGFPLERPKSMSTDSLMQFVRSKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |