Parental gene: | C1QBP, ENSCJAG00000011352 |
| Aliases: | None |
| Description: | complement component 1, q subcomponent binding protein [Source:HGNC Symbol;Acc:1243] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:97566754..97573285(-) |
>ENSCJAG00000011352
ATGCTGCCTCTGCTACGCTGCGTGCCCCGTGTACTGGGCTCCTCCGTTGCCGGCCTCCGCGCCGCGGCTCCCGCCTCGCC
TGCTTCGCCATTCCGGCAGCTCCTGCAGCCGGCGCCCCAGCTCTGCGCCCGGCCCTTCGGGCTGCTCAGCGTGCGCGCAG
GTTCCGAGCAGCGGCCGGGCCTCCTGCGGCCTCGCGGGCCCTGCGCCTGCGGCTGTGGCTGCGGCGCGCTGCACACCGAA
GGAGACAAAGCTTTTGTTGATTTCCTGAGTGATGAAATTAAGGAGGAAAGAAAAATCCAGAAGCATAAAACCCTCCCTAA
GATGTCTGGAGGTTGGGAGCTGGAACTGAATGGGACAGAAGCTAAATTAGTGCAGAAAGTTGCTGGGGAAACAATCACTG
TCACTTTCAATATTAACAACAGCATCCCACCAACATTTGATGGTGAGGAGGAACCCTCGAAAGGGCAGAAGGTTGAAGAA
CAGGAGCCTGAATTGACATCAACTCCCAATTTCGTGGTTGAAGTTATAAAGAATGATGGCAAGAAGGCCCTTGTGCTGGA
CTGTCATTATCCAGAAGATGAGGTTGGACAAGAGGATGAGGCTGAGAGTGACATCTTCTCTATCAGGGAAGTTAGCTTTC
AGTCCACTGGCAACTCTGAATGGAAGGATACTAATTACACACTCAACACAGATTCCCTGGACTGGGCCTTGTATGACCAC
CTAATGGATTTCCTTGCGGACCGAGGGGTGGACAACACTTTTGCAGATGAGTTGGTGGAGCTCAGCACAGCCCTGGAGCA
CCAGGAGTACATTACTTTTCTTGAAGACCTCAAAAGTTTTGTCAAGAGCAAGTAG
ATGCTGCCTCTGCTACGCTGCGTGCCCCGTGTACTGGGCTCCTCCGTTGCCGGCCTCCGCGCCGCGGCTCCCGCCTCGCC
TGCTTCGCCATTCCGGCAGCTCCTGCAGCCGGCGCCCCAGCTCTGCGCCCGGCCCTTCGGGCTGCTCAGCGTGCGCGCAG
GTTCCGAGCAGCGGCCGGGCCTCCTGCGGCCTCGCGGGCCCTGCGCCTGCGGCTGTGGCTGCGGCGCGCTGCACACCGAA
GGAGACAAAGCTTTTGTTGATTTCCTGAGTGATGAAATTAAGGAGGAAAGAAAAATCCAGAAGCATAAAACCCTCCCTAA
GATGTCTGGAGGTTGGGAGCTGGAACTGAATGGGACAGAAGCTAAATTAGTGCAGAAAGTTGCTGGGGAAACAATCACTG
TCACTTTCAATATTAACAACAGCATCCCACCAACATTTGATGGTGAGGAGGAACCCTCGAAAGGGCAGAAGGTTGAAGAA
CAGGAGCCTGAATTGACATCAACTCCCAATTTCGTGGTTGAAGTTATAAAGAATGATGGCAAGAAGGCCCTTGTGCTGGA
CTGTCATTATCCAGAAGATGAGGTTGGACAAGAGGATGAGGCTGAGAGTGACATCTTCTCTATCAGGGAAGTTAGCTTTC
AGTCCACTGGCAACTCTGAATGGAAGGATACTAATTACACACTCAACACAGATTCCCTGGACTGGGCCTTGTATGACCAC
CTAATGGATTTCCTTGCGGACCGAGGGGTGGACAACACTTTTGCAGATGAGTTGGTGGAGCTCAGCACAGCCCTGGAGCA
CCAGGAGTACATTACTTTTCTTGAAGACCTCAAAAGTTTTGTCAAGAGCAAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 13 .03 RPM |
| SRP051959_skeletal_muscle | 17 .32 RPM |
| SRP051959_lymph_node | 14 .98 RPM |
| SRP051959_lung | 9 .87 RPM |
| SRP051959_liver | 26 .40 RPM |
| SRP051959_kidney | 16 .88 RPM |
| SRP051959_heart | 14 .91 RPM |
| SRP051959_colon | 16 .73 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006043 | possible_ortholog | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000008887 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000026474 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000108561 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002745 | ortholog_one2one | 5 retrogenes | |
| Macropus eugenii | ENSMEUG00000014882 | ortholog_one2one | 13 retrogenes | |
| Macaca mulatta | ENSMMUG00000006592 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009081 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000001610 | ortholog_one2one | 5 retrogenes | |
| Ochotona princeps | ENSOPRG00000013150 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000007870 | ortholog_one2one | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000008631 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002466 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000002441 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_604 | 88.76 | 62.32 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_680 | 62.29 | 81.34 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_946 | 86.30 | 51.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2041 | 70.59 | 76.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2408 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_4033 | 75.60 | 73.24 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000011352 retrocopies