Parental gene: | RPLP2, ENSCJAG00000011838 |
| Aliases: | None |
| Description: | ribosomal protein, large, P2 [Source:HGNC Symbol;Acc:10377] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 11:129712574..129715368(-) |
>ENSCJAG00000011838
ATGCGCTACGTCGCCTCCTACCTGCTGGCTGCCCTCGGGGGCAACCCTTCCCCGAGCGCCAAGGACATCAAGAAGATCCT
GGACAGCGTCGGCATCGAGGCGGACGACGACCGGCTCAACAAGGTTATCAGCGAGCTGAACGGAAAGAACATTGAGGACG
TGATTGCCCAGGGTATTGGCAAGCTTGCCAGCGTACCTGCTGGTGGGGCTGTGGCCATCTCTGCTGCCCCAGGCTCTGCA
GCTCCTGCTGCTGGTTCCGCCCCCGCTGCCGCAGAGGAGAAGAAAGATGAGAAGAAGGAGGAGTCTGAAGAATCAGACGA
TGACATGGGATTTGGCCTCTTTGATTAA
ATGCGCTACGTCGCCTCCTACCTGCTGGCTGCCCTCGGGGGCAACCCTTCCCCGAGCGCCAAGGACATCAAGAAGATCCT
GGACAGCGTCGGCATCGAGGCGGACGACGACCGGCTCAACAAGGTTATCAGCGAGCTGAACGGAAAGAACATTGAGGACG
TGATTGCCCAGGGTATTGGCAAGCTTGCCAGCGTACCTGCTGGTGGGGCTGTGGCCATCTCTGCTGCCCCAGGCTCTGCA
GCTCCTGCTGCTGGTTCCGCCCCCGCTGCCGCAGAGGAGAAGAAAGATGAGAAGAAGGAGGAGTCTGAAGAATCAGACGA
TGACATGGGATTTGGCCTCTTTGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 70 .78 RPM |
| SRP051959_skeletal_muscle | 72 .76 RPM |
| SRP051959_lymph_node | 125 .31 RPM |
| SRP051959_lung | 68 .44 RPM |
| SRP051959_liver | 57 .68 RPM |
| SRP051959_kidney | 50 .56 RPM |
| SRP051959_heart | 48 .41 RPM |
| SRP051959_colon | 56 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006935 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000001777 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000009523 | ortholog_one2many | 1 retrogene | |
| Ciona intestinalis | ENSCING00000000626 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000010240 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000008417 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020627 | possible_ortholog | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000009049 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000026860 | possible_ortholog | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016296 | ortholog_one2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000002116 | possible_ortholog | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000001056 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000012842 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2399 | 73.33 | 90.43 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2497 | 73.28 | 97.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2539 | 80.00 | 99.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2745 | 79.71 | 59.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3097 | 84.82 | 94.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_3859 | 78.26 | 59.13 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000011838 retrocopies