RetrogeneDB ID: | retro_cjac_2399 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:978618..978931(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP2 | ||
Ensembl ID: | ENSCJAG00000011838 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P2 [Source:HGNC Symbol;Acc:10377] |
Percent Identity: | 73.33 % |
Parental protein coverage: | 90.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MRYVASYLLAALGGNPSPSAKDIKKILDSVGIEADDDRLNKVISELNGK-NIEDVIAQGIGKLASVPAGG |
M....S.LLAA...N.SPSAKDI.KILD.V.IE..DD.LNKVISELNGK.NIED.IAQG...LA.VPAG. | |
Retrocopy | MLCLTSFLLAASESNISPSAKDIQKILDRVSIETVDDWLNKVISELNGK>NIEDIIAQGTYELATVPAGE |
Parental | AVAISAAPGSAAPAAGSAPAAAEEKKDEKKEESEE |
AVAISA..GSAAPAAGS.PAAAEEKK.EK.E.SEE | |
Retrocopy | AVAISASLGSAAPAAGSTPAAAEEKKNEKEESSEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 56 .29 RPM |
SRP051959_heart | 0 .00 RPM | 48 .41 RPM |
SRP051959_kidney | 0 .02 RPM | 50 .56 RPM |
SRP051959_liver | 0 .00 RPM | 57 .68 RPM |
SRP051959_lung | 0 .00 RPM | 68 .44 RPM |
SRP051959_lymph_node | 0 .00 RPM | 125 .31 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 72 .76 RPM |
SRP051959_spleen | 0 .06 RPM | 70 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3440 |
Pan troglodytes | retro_ptro_2332 |
Gorilla gorilla | retro_ggor_2323 |
Pongo abelii | retro_pabe_2844 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006935 | 1 retrocopy | |
Bos taurus | ENSBTAG00000001777 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000009523 | 1 retrocopy | |
Ciona intestinalis | ENSCING00000000626 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011838 | 6 retrocopies |
retro_cjac_2399 , retro_cjac_2497, retro_cjac_2539, retro_cjac_2745, retro_cjac_3097, retro_cjac_3859,
|
Echinops telfairi | ENSETEG00000010240 | 4 retrocopies | |
Felis catus | ENSFCAG00000008417 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020627 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000009049 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000026860 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000016296 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002116 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001056 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012842 | 1 retrocopy |