Parental gene:

KARS, ENSCJAG00000014213

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:20:29585580..29604018(-)


>ENSCJAG00000014213
ATGTTGACGCAAGCTGCTGTAAGGCTTGTTAGGGGGTCCGTGCGCAAAACCTCCTGGGCGGAGTGGGGTCACAGGGGACT
GCGACTGGGTCAACTTGCTCCTTGGACAGCGCCTCACAAGGACAAGCCATTTTCTGATCAAAGAAGTGAGCTGAAGAGAC
GCCTGAAAGCTGAGAAGAAAGTAGCAGAGAAGGAGGCCAAGCAGAAAGAGCTTAGTGAGAAACAGCTAAGCCAAGCCACC
GCTGCTGCCACCAACCACACTGCTGACAATGGTGTGGGTCCTGAGGAAGAGAGCCTGGACCCAAATCAATACTACAAAAT
CCGCAGTCAAGCAATTCATCAGCTGAAGGTCAGTGGGGAAGACCCATACCCACACAAGTTCCATGTAGACATCTCACTCA
CCGACTTCATCCAAGAATATAGTCACCTGCAGCCTGGGGATCACCTGACTGACATCACCTTAAGGGTGGCAGGTAGGATT
CATGCCAAAAGAGCTTCTGGGGGAAAGCTTATCTTCTATGATCTTCGAGGAGAGGGGGTGAAGTTGCAAGTCATGGCCAA
TTCCAGAAATTATAAATCAGAAGAAGAATTTATTCATATTAATAACAAACTGCGTCGGGGAGACATAATTGGAGTTCAGG
GGAATCCTGGGAAGACCAAGAAGGGTGAACTGAGCATCATTCCGTATGAGATCACACTGCTGTCTCCCTGTTTGCATATG
TTACCTCATCTTCACTTTGGCCTCAAAGACAAGGAAACAAGGTATCGCCAGAGATACCTGGACTTGATCCTGAATGACTT
CGTGAGGCAGAAATTTATCACCCGCTCTAAGATCATCACATATATAAGAAGTTTTATGGATGAGCTGGGATTCCTGGAGA
TTGAAACTCCCATGATGAACATCATCCCAGGGGGAGCTGTGGCCAAGCCTTTCATCACTTATCACAATGAGCTGGACATG
AACTTATATATGAGAATTGCTCCAGAACTCTACCATAAGATGCTCGTGGTTGGTGGCATCGATCGGGTTTATGAAATTGG
ACGCCAGTTCCGGAATGAGGGGATTGATTTGACACACAATCCTGAGTTCACCACCTGTGAGTTCTACATGGCCTATGCAG
ACTATCACGATCTCATGGAAATCACGGAGAAAATGGTTTCAGGGATGGTGAAGCATATTACAGGCGGTTATAAAGTCACC
TACCACCCAGATGGCCCAGAGGGCCAGGCCTATGAAATTGACTTCACCCCACCCTTCCGGAGAATCAGCATGATAGAAGA
GCTTGAGAAAGCCCTGGGGATGAAGCTGCCAGAAACTAACCTCTTTGAAACTGAAGAAACTCGCAAAATTCTTGATGATA
TCTGTGTGGCAAAAGCTGTCGAATGCCCTCCACCTCGGACCACAGCCAGGCTCCTTGACAAGCTTGTAGGGGAGTTCCTG
GAAGTAACTTGCATCAATCCTACGTTCATCTGTGATCACCCACAGATAATGAGCCCTTTGGCTAAATGGCACCGCTCTAA
AGAGGGTCTGACGGAGCGCTTTGAGCTATTTGTCATGAAGAAAGAGATATGTAATGCCTACACTGAGCTGAATGATCCCA
TGCGGCAGCGGCAGCTTTTTGAAGAACAGGCCAAGGCCAAGGCTGCAGGTGATGATGAGGCCATGTTCATAGATGAAAAC
TTCTGTACCGCCCTGGAATATGGGCTGCCCCCCACGGCTGGCTGGGGCATGGGCATTGACCGAGTCGCCATGTTTCTCAC
AGACTCCAACAACATCAAGGAAGTACTTCTGTTTCCTGCTATGAAACCTGAAGACAAGAAGGAGAATGTAGCACCCACTG
AGACGCTGGAAAGTACAGCAGTTGGCACTTCTGTCTAG

Library Parental gene expression (RPM)
SRP051959_colon 29 .71 RPM
SRP051959_heart 37 .71 RPM
SRP051959_kidney 35 .70 RPM
SRP051959_liver 42 .04 RPM
SRP051959_lung 32 .99 RPM
SRP051959_lymph_node 35 .57 RPM
SRP051959_skeletal_muscle 93 .95 RPM
SRP051959_spleen 32 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013447 ortholog_one2one 1 retrogene
retro_chof_2324,
Homo sapiens ENSG00000065427 ortholog_one2one 1 retrogene
retro_hsap_1191,
Gorilla gorilla ENSGGOG00000005515 ortholog_one2one 1 retrogene
retro_ggor_930,
Mus musculus ENSMUSG00000031948 ortholog_one2one 8 retrogenes
retro_mmus_3536, retro_mmus_3537, retro_mmus_3538, retro_mmus_3539, retro_mmus_3540, retro_mmus_3541, retro_mmus_3542, retro_mmus_3543,
Nomascus leucogenys ENSNLEG00000013072 ortholog_one2one 1 retrogene
retro_nleu_2080,
Pongo abelii ENSPPYG00000007567 ortholog_one2one 1 retrogene
retro_pabe_992,
Pan troglodytes ENSPTRG00000008364 ortholog_one2one 1 retrogene
retro_ptro_3036,
Pteropus vampyrus ENSPVAG00000006746 ortholog_one2one 2 retrogenes
retro_pvam_1301, retro_pvam_723,
Sorex araneus ENSSARG00000011493 ortholog_one2one 1 retrogene
retro_sara_415,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_608 97.99 100.00
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2. retro_cjac_4104 82.39 81.74
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Download FASTA sequences of all ENSCJAG00000014213 retrocopies