Parental gene: | SNW1, ENSCJAG00000016947 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:103113845..103157967(-) |
>ENSCJAG00000016947
ATGGCGCTCACCAGCTTTTTACCTGCACCTACTCAGCTATCTCAGGACCAGCTAGAGGCTGAAGAAAAGGCAAGATCCCA
GAGATCACGGCAGACCTCATTGGTCTCCTCCCGAAGAGAGCCTCCCCCGTACGGATATCGGAAAGGCTGGATACCTCGGT
TATTAGAGGATTTTGGAGATGGAGGTGCTTTTCCAGAGATCCATGTGGCTCAGTATCCACTGGATATGGGACGAAAGAAA
AAAATGTCGAATGCACTGGCCATTCAGGTGGATTCTGAAGGAAAAATTAAATATGATGCAATCGCTCGACAAGGACAGTC
AAAAGACAAGGTCATTTACAGCAAATACACTGACCTGGTTCCAAAGGAGGTTATGAATGCAGATGACCCAGACCTGCAAA
GGCCCGATGAAGAAGCTATTAAAGAGATAACAGAAAAGACAAGAGTAGCCTTAGAAAAATCTGTATCACAGAAGGTTGCT
GCAGCCATGCCAGTTCGGGCAGCTGACAAACTGGCTCCTGCTCAGTATATCCGATACACACCATCTCAGCAAGGAGTGGC
TTTCAACTCTGGAGCTAAACAGAGGGTTATTCGGATGGTAGAAATGCAAAAAGATCCAATGGAGCCTCCAAGATTCTTCA
GGATTAATAAGAAAATTCCCCGGGGACCACCTTCTCCTCCTGCACCTGTCATGCATTCTCCTAGCCGAAAGATGACTGTA
AAGGAACAACAAGAGTGGAAGATTCCTCCTTGTATTTCTAACTGGAAAAATGCAAAGGGTTATACAATTCCATTAGACAA
ACGTCTGGCTGCTGATGGAAGAGGACTACAGACAGTACACATAAATGAAAATTTTGCCAAACTGGCCGAAGCCCTCTACA
TTGCTGATCGGAAGGCTCGTGAAGCTGTGGAAATGCGTGCCCAAGTAGAGAGAAAAATGGCTCAAAAAGAAAAGGAAAAA
CATGAAGAGAAACTTAGAGAAATGGCCCAGAAAGCCAGGGAGAGAAGAGCTGGGATCAAAACTCATGTGGAAAAAGAGGA
TGGGGAGGCACGTGAGAGGGATGAAATCCGGCATGACAGGCGAAAAGAGAGACAGCATGACCGGAATCTTTCCAGGGCAG
CTCCTGATAAGAGGTCAAAACTTCAGAGAAATGAAAATCGGGATATCAGTGAGGTCATTGCTCTCGGTGTTCCCAATCCT
CGGACTTCCAATGAAGTTCAGTACGACCAAAGGCTCTTCAACCAATCCAAGGGTATGGACAGTGGATTTGCAGGAGGAGA
AGATGAAATTTATAATGTTTATGATCAAGCCTGGAGAGGTGGTAAAGATATGGCCCAGAGTATTTATAGGCCCAGTAAAA
ATCTGGACAAGGACATGTATGGTGATGACCTAGAAGCCAGAATAAAGACCAACAGATTTGTTCCCGACAAGGAGTTTTCT
GGTTCAGACCGTAGGCAGAGAGGCCGAGAAGGACCAGTTCAATTTGAGGAAGATCCTTTTGGTTTGGACAAGTTTTTGGA
AGAAGCCAAACAGCATGGTGGCTCTAAAAGACCCTCAGATAGCAGCCGCCCCAAGGAACATGAGCATGAAGGCAAGAAGA
GGAGGAAGGAGTAG
ATGGCGCTCACCAGCTTTTTACCTGCACCTACTCAGCTATCTCAGGACCAGCTAGAGGCTGAAGAAAAGGCAAGATCCCA
GAGATCACGGCAGACCTCATTGGTCTCCTCCCGAAGAGAGCCTCCCCCGTACGGATATCGGAAAGGCTGGATACCTCGGT
TATTAGAGGATTTTGGAGATGGAGGTGCTTTTCCAGAGATCCATGTGGCTCAGTATCCACTGGATATGGGACGAAAGAAA
AAAATGTCGAATGCACTGGCCATTCAGGTGGATTCTGAAGGAAAAATTAAATATGATGCAATCGCTCGACAAGGACAGTC
AAAAGACAAGGTCATTTACAGCAAATACACTGACCTGGTTCCAAAGGAGGTTATGAATGCAGATGACCCAGACCTGCAAA
GGCCCGATGAAGAAGCTATTAAAGAGATAACAGAAAAGACAAGAGTAGCCTTAGAAAAATCTGTATCACAGAAGGTTGCT
GCAGCCATGCCAGTTCGGGCAGCTGACAAACTGGCTCCTGCTCAGTATATCCGATACACACCATCTCAGCAAGGAGTGGC
TTTCAACTCTGGAGCTAAACAGAGGGTTATTCGGATGGTAGAAATGCAAAAAGATCCAATGGAGCCTCCAAGATTCTTCA
GGATTAATAAGAAAATTCCCCGGGGACCACCTTCTCCTCCTGCACCTGTCATGCATTCTCCTAGCCGAAAGATGACTGTA
AAGGAACAACAAGAGTGGAAGATTCCTCCTTGTATTTCTAACTGGAAAAATGCAAAGGGTTATACAATTCCATTAGACAA
ACGTCTGGCTGCTGATGGAAGAGGACTACAGACAGTACACATAAATGAAAATTTTGCCAAACTGGCCGAAGCCCTCTACA
TTGCTGATCGGAAGGCTCGTGAAGCTGTGGAAATGCGTGCCCAAGTAGAGAGAAAAATGGCTCAAAAAGAAAAGGAAAAA
CATGAAGAGAAACTTAGAGAAATGGCCCAGAAAGCCAGGGAGAGAAGAGCTGGGATCAAAACTCATGTGGAAAAAGAGGA
TGGGGAGGCACGTGAGAGGGATGAAATCCGGCATGACAGGCGAAAAGAGAGACAGCATGACCGGAATCTTTCCAGGGCAG
CTCCTGATAAGAGGTCAAAACTTCAGAGAAATGAAAATCGGGATATCAGTGAGGTCATTGCTCTCGGTGTTCCCAATCCT
CGGACTTCCAATGAAGTTCAGTACGACCAAAGGCTCTTCAACCAATCCAAGGGTATGGACAGTGGATTTGCAGGAGGAGA
AGATGAAATTTATAATGTTTATGATCAAGCCTGGAGAGGTGGTAAAGATATGGCCCAGAGTATTTATAGGCCCAGTAAAA
ATCTGGACAAGGACATGTATGGTGATGACCTAGAAGCCAGAATAAAGACCAACAGATTTGTTCCCGACAAGGAGTTTTCT
GGTTCAGACCGTAGGCAGAGAGGCCGAGAAGGACCAGTTCAATTTGAGGAAGATCCTTTTGGTTTGGACAAGTTTTTGGA
AGAAGCCAAACAGCATGGTGGCTCTAAAAGACCCTCAGATAGCAGCCGCCCCAAGGAACATGAGCATGAAGGCAAGAAGA
GGAGGAAGGAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 39 .66 RPM |
| SRP051959_skeletal_muscle | 34 .24 RPM |
| SRP051959_lymph_node | 38 .10 RPM |
| SRP051959_lung | 43 .68 RPM |
| SRP051959_liver | 25 .21 RPM |
| SRP051959_kidney | 40 .80 RPM |
| SRP051959_heart | 32 .27 RPM |
| SRP051959_colon | 26 .51 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003976 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000030409 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000012380 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000001637 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000003482 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000005228 | ortholog_one2many | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000005252 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000008724 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000021039 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000007568 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006031 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000002279 | ortholog_one2one | 3 retrogenes | |
| Taeniopygia guttata | ENSTGUG00000012340 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000010951 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_576 | 89.84 | 56.61 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2932 | 77.81 | 57.54 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000016947 retrocopies