RetrogeneDB ID: | retro_lafr_787 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_38:16103084..16104101(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNW1 | ||
Ensembl ID: | ENSLAFG00000003482 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.06 % |
Parental protein coverage: | 63.99 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 0 |
Parental | FLPAPTQLSQDQLEAEEKARSQRSRQTSLVSSRREPPPYGYRKGWIPRLLEDFGDGGAFPEIHVAQYPLE |
FLP.PTQ..QDQLEA.EKA.SQRS.Q.SLVS.RR.PPPY...KGW.P..LEDFGDG..FPE.HVAQYPL. | |
Retrocopy | FLPTPTQVYQDQLEAKEKANSQRSQQNSLVSFRRGPPPYRCQKGWRPLPLEDFGDGSTFPENHVAQYPLD |
Parental | MGRKKKMSNALAIQVDAEGKIKYDAIARQGQSKDKVIYSKYTDLVPKEVMNADDPDLQRPDEEAIKEITE |
MG..K.....L..QVD..GK...........SKDKVIYSKYTDL.PKEV.NA.DPDLQRP.EE.I.EI.E | |
Retrocopy | MGQRKMVFSELIVQVDD*GKLNWIQLFNKEKSKDKVIYSKYTDLIPKEVVNAEDPDLQRPKEETI-EIRE |
Parental | KTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKIN |
K....L.K....KV..AMPV.AADKLA.A.YI..T.SQQGV.F.SGA..RVI.MVEMQKDP.E.PR.KIN | |
Retrocopy | KN--SLRKICIKKVTQAMPV*AADKLASALYIL*TLSQQGVTFHSGAN*RVIYMVEMQKDPVEHPRLKIN |
Parental | KKIPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHINENFA |
.K.P.G.P.PPA.VMHSPS.K...KE.Q.W.I.PCIS.WKN.K..TIP.DK.LA..G.GLQ.VHINEN.A | |
Retrocopy | RKTPPGLPFPPATVMHSPS*KVAMKE-QDWEILPCISEWKNTKSCTIPSDKCLAPEG*GLQRVHINENLA |
Parental | KLAEALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGE |
KLA.AL.IAD.KA.EAVEM.AQVERK.AQKEKEK.E.KL.E.AQKARERRA.IK.H.EK.DG. | |
Retrocopy | KLAGALCIADHKAHEAVEMHAQVERKIAQKEKEKYE*KL*ETAQKARERRAEIKVHMEKDDGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |