Parental gene: | ATXN3, ENSCJAG00000018025 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:117483687..117689710(-) |
>ENSCJAG00000018025
ATGGAGTCCATCTTCCACGAGAAACAAGAAGGCTCACTTTGTGCTCAGCATTGCCTGAATAATTTATTGCAAGGAGAATA
TTTTAGCCCTGTGGAGTTATCCTCAATTGCACATCAGCTGGATGAGGAAGAAAGGATGAGAATGGCAGAAGGAGGAGTTA
CTAGTGAAGATTATCGCACATTTTTACAGCAGCCTTCTGGAAATATGGATGACAGTGGTTTCTTCTCTATTCAGGTTATA
AGCAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTGTTCAACAGTCCCGAGTATCAGAGGCTCAGGATCGATCCTAT
AAATGAAAGATCATTTATATGCAATTATAAGGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTTAACTTGA
ATTCTCTCTTGACGGGTCCAGAATTAATATCAGATACATATCTTGCACTTTTCTTGGCTCAGTTACAACAGGAAGGTTAT
TCTATATTTGTTGTTAAGGGTGATCTGCCAGATTGTGAAGCTGACCAACTTCTACAGATGATTAGGGTCCAACAGATGCA
TCGACCAAAACTTATTGGAGAAGAATTAGCACAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGGAACGAGTGTTAG
AAGCAAATGATGGCTCAGGAATGTTAGATGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTAAGCCGCCAAGAAATT
GACATGGAAGATGAGGAAGCAGATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAGTTCCAGAAATATATCTCAAGA
TATTCCACAGACAACAGGTACAAATCTTACTTCAGAAGAGCTTCGGAAGAGACGAGAAGCCTACTTTGAAAAGTCAGAAA
ACAAAAGGCTCATAGCTGAATCTGAGCTATTAGAAACTATGATACAAACTTTACAGGTATATCTAAGAAAAGGAGACCCA
TCAGGACAGAGTTCACATCCATGTGAAAGGCCAACCACCAGTTCAGGAGCTCTTGGGAATGATCTAGGTAAGTCCTGCTC
ACCATTCATCATGTTTGTTACCTTCACACTTTATCTGACCAGGCTTCCTGTGATTTTTGCTTTATATTATTCTTTTTCCC
CTCTTTAA
ATGGAGTCCATCTTCCACGAGAAACAAGAAGGCTCACTTTGTGCTCAGCATTGCCTGAATAATTTATTGCAAGGAGAATA
TTTTAGCCCTGTGGAGTTATCCTCAATTGCACATCAGCTGGATGAGGAAGAAAGGATGAGAATGGCAGAAGGAGGAGTTA
CTAGTGAAGATTATCGCACATTTTTACAGCAGCCTTCTGGAAATATGGATGACAGTGGTTTCTTCTCTATTCAGGTTATA
AGCAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTGTTCAACAGTCCCGAGTATCAGAGGCTCAGGATCGATCCTAT
AAATGAAAGATCATTTATATGCAATTATAAGGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTTAACTTGA
ATTCTCTCTTGACGGGTCCAGAATTAATATCAGATACATATCTTGCACTTTTCTTGGCTCAGTTACAACAGGAAGGTTAT
TCTATATTTGTTGTTAAGGGTGATCTGCCAGATTGTGAAGCTGACCAACTTCTACAGATGATTAGGGTCCAACAGATGCA
TCGACCAAAACTTATTGGAGAAGAATTAGCACAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGGAACGAGTGTTAG
AAGCAAATGATGGCTCAGGAATGTTAGATGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTAAGCCGCCAAGAAATT
GACATGGAAGATGAGGAAGCAGATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAGTTCCAGAAATATATCTCAAGA
TATTCCACAGACAACAGGTACAAATCTTACTTCAGAAGAGCTTCGGAAGAGACGAGAAGCCTACTTTGAAAAGTCAGAAA
ACAAAAGGCTCATAGCTGAATCTGAGCTATTAGAAACTATGATACAAACTTTACAGGTATATCTAAGAAAAGGAGACCCA
TCAGGACAGAGTTCACATCCATGTGAAAGGCCAACCACCAGTTCAGGAGCTCTTGGGAATGATCTAGGTAAGTCCTGCTC
ACCATTCATCATGTTTGTTACCTTCACACTTTATCTGACCAGGCTTCCTGTGATTTTTGCTTTATATTATTCTTTTTCCC
CTCTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 41 .11 RPM |
| SRP051959_skeletal_muscle | 10 .74 RPM |
| SRP051959_lymph_node | 41 .66 RPM |
| SRP051959_lung | 45 .92 RPM |
| SRP051959_liver | 25 .56 RPM |
| SRP051959_kidney | 32 .77 RPM |
| SRP051959_heart | 28 .42 RPM |
| SRP051959_colon | 37 .45 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000005786 | ortholog_one2many | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000005302 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000010887 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000066427 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020751 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002006 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017126 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000006075 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000015316 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000008099 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_375 | 65.37 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1724 | 94.33 | 54.52 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000018025 retrocopies